Region for Gene C37C3.2c

This page describes one promoter-based search region.

The image shown below was created to provide context for this search region by showing a 100000 bp span of the genome, centered on this search region.

The first track shows the location of the search region in red. The last track shows known gene locations in this 100000 bp span of the genome.

This promoter-based search region is located close to a particular gene of interest, described in the table below. Click on the gene id to open a page at ensembl.org with more information about this gene.

The image shown below illustrates the location of the motifs and modules within this search region.
However, the number of modules in a region may exceed the genome browser's track limit. Thus, for each type of module (pattern), the text in the yellow box below indicates whether or not any modules of that type exist, and if so, whether or not all the modules of that type are displayed. (If it indicates that only the top 20 modules are displayed, this ranking is based on the number of instances of each module.)

User-specified filter settings do not affect the features displayed in the UCSC genome browser view.

About the patterns shown in this image:
There are no 'de novo' patterns to show.
There are no (TRANSFAC) annotation-based patterns to show.
There are no (JASPAR) annotation-based patterns to show.

Click on the image to view this region at UCSC.

This image uses the C.elegans genome assembly from Jan 2007. (UCSC ce4, WS170, Ensembl v45) and contains a number of custom tracks followed by several UCSC tracks. The custom tracks show: The long red and gray bar at the top shows the nominal 'search region' within which comparative genomics discovery methods were applied. Motif predictions were not made in coding exons and most types of repeats. In this database, the locations of masks applied to the search region are shown in gray. The numbered brown blocks are 'atomic' motifs, i.e. conserved DNA sequence motifs that were identified by discovery methods and post-processing operations. Motifs are shaded to indicate the discovery p-value; a darker motif was more significant at the discovery stage. Following the motif discovery stage, motifs were filtered by membership in co-occurring patterns, and patterns were ranked by genome-scale properties. Motifs instances that occur in highly-ranked putative regulatory modules may be more reliable predictions of functional genomic elements. The connected sets of blue boxes are co-occurring patterns, i.e. putative regulatory modules. Modules are shaded to indicate the number of times that a pattern is found in the target genome; a darker module is associated with more search regions. An pattern is called either 'de novo' or annotation-based, depending on the type of groups that appear in the pattern. (see next point) Before patterns (i.e. modules) can be identified from atomic motifs, groups of similar motifs must be found; modules are then identified as co-occurring 'group labels' that satisfy certain criteria. Such groups can be identified a) by annotating atomic motifs with known binding site resources from TRANSFAC, JASPAR or ORegAnno; or b) by 'de novo' clustering. Currently we show both types of patterns, but we consider annotation-based groups and patterns to be more reliable than 'de novo' groups and patterns. Work to improve genome-scale 'de novo' grouping is ongoing.

Showing 80 out of 80 atomic motifs.

Group(s) crtCele#(name) [p-value]	Motif craCele#	Discovery p-value	Location	Width	(+)motif	(-)motif
0 annotated groups 0 'de novo' group(s)	29795	8.73E-01	CHROMOSOME_V:7,854,291-7,854,298	8	rGTTTGCA	TGCAAACy
1 annotated group(s): 40154 (Pax-5) [5.40E-06] 0 'de novo' group(s)	29796	9.48E-01	CHROMOSOME_V:7,854,295-7,854,308	14	CGCATACAmTGTTG	CAACAkTGTATGCG
1 annotated group(s): 40154 (Pax-5) [5.40E-06] 3 'de novo' group(s) 28, 159, 1141	29797	9.88E-01	CHROMOSOME_V:7,854,303-7,854,321	19	AwnyGGACTCGTkwTmTCT	AGAkAsmACGAGTCCrnsT
0 annotated groups 0 'de novo' group(s)	29798	9.09E-01	CHROMOSOME_V:7,854,332-7,854,341	10	GTATkCCATT	AATGGmATAC
0 annotated groups 0 'de novo' group(s)	29799	6.69E-01	CHROMOSOME_V:7,854,350-7,854,357	8	GATCGATT	AATCGATC
0 annotated groups 0 'de novo' group(s)	29800	9.95E-01	CHROMOSOME_V:7,854,376-7,854,389	14	AGGGwTGTyGATCA	TGATCrACAsCCCT
0 annotated groups 0 'de novo' group(s)	29801	9.38E-01	CHROMOSOME_V:7,854,390-7,854,399	10	yACATATCAA	TTGATATGTr
0 annotated groups 0 'de novo' group(s)	29802	8.02E-01	CHROMOSOME_V:7,854,415-7,854,422	8	TCTTCGCC	GGCGAAGA
0 annotated groups 0 'de novo' group(s)	29803	9.71E-01	CHROMOSOME_V:7,854,428-7,854,442	15	TGTGCAGTGTmAGCr	yGCTkACACTGCACA
0 annotated groups 0 'de novo' group(s)	29804	9.97E-01	CHROMOSOME_V:7,854,445-7,854,458	14	AAAGAAACTGAAGA	TCTTCAGTTTCTTT
0 annotated groups 0 'de novo' group(s)	29805	9.54E-01	CHROMOSOME_V:7,854,456-7,854,467	12	sAATATTGrAwG	CsTyCAATATTw
2 annotated group(s): 40209 (XBP-1) [5.24E-06] 40126 (MTF-1) [5.83E-06] 5 'de novo' group(s) 27, 1203, 2908, 1860, 2119	29807	9.98E-01	CHROMOSOME_V:7,854,461-7,854,496	36	TTGAAAGTTACGTGGmT...	snnrnrsnAnAkAnnCm...
1 annotated group(s): 40126 (MTF-1) [5.83E-06] 0 'de novo' group(s)	29806	8.78E-01	CHROMOSOME_V:7,854,477-7,854,486	10	GTyTGCwTCT	AGAsGCArAC
0 annotated groups 1 'de novo' group(s) 2638	29808	9.94E-01	CHROMOSOME_V:7,854,494-7,854,517	24	nsAkGwyrTCACGAAAT...	TGTyTwCATTTCGTGAy...
0 annotated groups 2 'de novo' group(s) 7, 26	29809	9.99E-01	CHROMOSOME_V:7,854,511-7,854,530	20	ACATATCAAnCGGACTCGTG	CACGAGTCCGnTTGATATGT
1 annotated group(s): 50065 (PPARgamma-RXRal) [5.58E-05] 0 'de novo' group(s)	29810	8.89E-01	CHROMOSOME_V:7,854,537-7,854,544	8	AGGGAGGT	ACCTCCCT
1 annotated group(s): 50065 (PPARgamma-RXRal) [5.58E-05] 0 'de novo' group(s)	29811	9.41E-01	CHROMOSOME_V:7,854,543-7,854,552	10	CkGAnTsGTG	CACwAnTCmG
2 annotated group(s): 50065 (PPARgamma-RXRal) [5.58E-05] 30009 (DAF-19) [9.81E-05] 0 'de novo' group(s)	29812	9.94E-01	CHROMOSOME_V:7,854,548-7,854,566	19	wGnTGAArAGTTGCGAAnn	nnTTCGCAACTyTTCAnCs
1 annotated group(s): 30009 (DAF-19) [9.81E-05] 7 'de novo' group(s) 502, 949, 1228, 1490, 2802, 3022, 2265	29813	9.96E-01	CHROMOSOME_V:7,854,560-7,854,595	36	GCGAAGATAACGTGTTr...	TkTTTTCTCTCTCrACw...
0 annotated groups 1 'de novo' group(s) 57	29814	8.27E-01	CHROMOSOME_V:7,854,599-7,854,606	8	CrCGAGwC	GsCTCGyG
1 annotated group(s): 50091 (Tal1beta-E47S) [5.36E-05] 5 'de novo' group(s) 77, 624, 1186, 2669, 1817	29816	9.95E-01	CHROMOSOME_V:7,854,619-7,854,646	28	kwnAGACGsAGGTkGTy...	snnGTTyTCkGrACmAC...
1 annotated group(s): 50091 (Tal1beta-E47S) [5.36E-05] 0 'de novo' group(s)	29815	9.30E-01	CHROMOSOME_V:7,854,625-7,854,632	8	CGCAGsTG	CAwCTGCG
1 annotated group(s): 40190 (SREBP-1) [7.08E-06] 6 'de novo' group(s) 38, 1562, 161, 1112, 1206, 2894	29817	9.97E-01	CHROMOSOME_V:7,854,642-7,854,672	31	nnnnnAGAGAAAACnAn...	nnnCnnnnTnnnGCnTn...
3 annotated group(s): 40190 (SREBP-1) [7.08E-06] 40047 (CP2) [9.10E-06] 50079 (SP1) [6.11E-05] 4 'de novo' group(s) 463, 1329, 2761, 2190	29818	9.61E-01	CHROMOSOME_V:7,854,667-7,854,685	19	CCGCTCACAGCCAGyCCCA	TGGGrCTGGCTGTGAGCGG
2 annotated group(s): 40154 (Pax-5) [1.28E-07] 40047 (CP2) [9.10E-06] 0 'de novo' group(s)	29819	9.67E-01	CHROMOSOME_V:7,854,682-7,854,698	17	CsCwTCAArCsTCTTCG	CGAAGAwGyTTGAsGwG
1 annotated group(s): 40154 (Pax-5) [1.28E-07] 2 'de novo' group(s) 51, 3143	29820	9.73E-01	CHROMOSOME_V:7,854,691-7,854,705	15	CCTCTTCGGsCATCG	CGATGwCCGAAGAGG
1 annotated group(s): 40154 (Pax-5) [1.28E-07] 6 'de novo' group(s) 4, 51, 231, 754, 1488, 3090	29823	9.99E-01	CHROMOSOME_V:7,854,699-7,854,728	30	GnCrnCnnnnnAyAGAC...	wAAAmTGATGTGTGTCT...
1 annotated group(s): 40154 (Pax-5) [1.28E-07] 1 'de novo' group(s) 4	29821	5.19E-01	CHROMOSOME_V:7,854,705-7,854,710	6	GACGCA	TGCGTC
0 annotated groups 1 'de novo' group(s) 2333	29822	9.88E-01	CHROMOSOME_V:7,854,721-7,854,732	12	TsrTTTTGCCCC	GGGGCAAAAywA
0 annotated groups 0 'de novo' group(s)	29824	9.25E-01	CHROMOSOME_V:7,854,744-7,854,755	12	ATTCCGTmAAGT	ACTTkACGGAAT
1 annotated group(s): 40153 (Pax-2) [6.56E-06] 4 'de novo' group(s) 35, 158, 1504, 3072	29825	9.96E-01	CHROMOSOME_V:7,854,750-7,854,775	26	nCAAnTATTTCGCAACT...	AsAnwGAsAAGTTGCGA...
0 annotated groups 0 'de novo' group(s)	29826	4.74E-01	CHROMOSOME_V:7,854,787-7,854,792	6	ATACAC	GTGTAT
0 annotated groups 0 'de novo' group(s)	29827	9.47E-01	CHROMOSOME_V:7,854,795-7,854,807	13	TTyAGGGArGTTG	CAACyTCCCTrAA
0 annotated groups 4 'de novo' group(s) 36, 676, 2849, 1741	29828	9.97E-01	CHROMOSOME_V:7,854,806-7,854,829	24	nCsTCTTCTTCTACTTG...	GnnrrACCAAGTAGAAG...
0 annotated groups 2 'de novo' group(s) 742, 3086	29829	9.96E-01	CHROMOSOME_V:7,854,826-7,854,846	21	TGACCrCATCAGATAAC...	CCCAGTTATCTGATGyG...
1 annotated group(s): 50106 (p53) [7.54E-05] 14 'de novo' group(s) 110, 121, 146, 671, 730, 812, 2435, 2519, 2660, 3195, 1678, 1780, 1958, 2362	29830	9.89E-01	CHROMOSOME_V:7,854,841-7,854,891	51	AnTnGGAGnTCnAswnn...	TGnnnnCGnksTTGTnn...
0 annotated groups 6 'de novo' group(s) 37, 601, 1500, 2634, 3029, 1592	29831	4.23E-01	CHROMOSOME_V:7,854,896-7,854,930	35	CAATTTTATGATCGACA...	nCTTACCTTCTTGAGGG...
0 annotated groups 1 'de novo' group(s) 121	29832	9.55E-01	CHROMOSOME_V:7,854,937-7,854,946	10	ACrTGTTGGC	GCCAACAyGT
1 annotated group(s): 30003 (15492775-EARLY-1) [3.74E-05] 3 'de novo' group(s) 4, 288, 881	29833	8.76E-01	CHROMOSOME_V:7,854,947-7,854,956	10	CCTGCGTCTC	GAGACGCAGG
1 annotated group(s): 50048 (Hen-1) [9.03E-05] 0 'de novo' group(s)	29834	4.74E-01	CHROMOSOME_V:7,854,972-7,854,977	6	AACCTG	CAGGTT
0 annotated groups 1 'de novo' group(s) 29	29835	9.94E-01	CHROMOSOME_V:7,854,980-7,854,997	18	TCAGGGmGGTTGTCCAGA	TCTGGACAACCkCCCTGA
0 annotated groups 0 'de novo' group(s)	29836	5.50E-01	CHROMOSOME_V:7,855,002-7,855,009	8	CATTCCCT	AGGGAATG
0 annotated groups 0 'de novo' group(s)	29837	7.42E-01	CHROMOSOME_V:7,855,010-7,855,019	10	AGGGAGkTTG	CAAmCTCCCT
0 annotated groups 0 'de novo' group(s)	29838	9.94E-01	CHROMOSOME_V:7,855,017-7,855,028	12	TTTGTATGTGyA	TrCACATACAAA
0 annotated groups 7 'de novo' group(s) 15, 95, 510, 846, 1106, 2431, 1593	29839	9.99E-01	CHROMOSOME_V:7,855,036-7,855,061	26	AAAATCCACATATCAAy...	ACGAGTCCGrTTGATAT...
0 annotated groups 0 'de novo' group(s)	29840	9.60E-01	CHROMOSOME_V:7,855,055-7,855,071	17	nnnnnnAnAyGCAGGTk	mACCTGCrTnTnnnnnn
0 annotated groups 0 'de novo' group(s)	29841	9.49E-01	CHROMOSOME_V:7,855,066-7,855,077	12	GAGGGTTGTCGA	TCGACAACCCTC
0 annotated groups 1 'de novo' group(s) 380	29842	7.92E-01	CHROMOSOME_V:7,855,073-7,855,085	13	GGnGGTTGTCmAG	CTkGACAACCnCC
0 annotated groups 0 'de novo' group(s)	29843	9.94E-01	CHROMOSOME_V:7,855,090-7,855,103	14	TCAGGGmGGTTGTC	GACAACCkCCCTGA
0 annotated groups 0 'de novo' group(s)	29844	9.53E-01	CHROMOSOME_V:7,855,104-7,855,115	12	TCTTTCTCTTTC	GAAAGAGAAAGA
0 annotated groups 0 'de novo' group(s)	29845	9.61E-01	CHROMOSOME_V:7,855,120-7,855,131	12	GAAAGAGAAAGA	TCTTTCTCTTTC
0 annotated groups 0 'de novo' group(s)	29846	7.44E-01	CHROMOSOME_V:7,855,136-7,855,141	6	TTTCGC	GCGAAA
0 annotated groups 1 'de novo' group(s) 329	29847	9.94E-01	CHROMOSOME_V:7,855,143-7,855,154	12	AAGACGsTCTAA	TTAGAwCGTCTT
0 annotated groups 2 'de novo' group(s) 2443, 1926	29848	8.88E-01	CHROMOSOME_V:7,855,205-7,855,220	16	AACATGCAnAwnTnnT	AnnAnsTnTGCATGTT
2 annotated group(s): 40156 (Pax-8) [3.23E-06] 40156 (Pax-8) [8.37E-06] 0 'de novo' group(s)	29849	9.90E-01	CHROMOSOME_V:7,855,225-7,855,236	12	GTTrwnCATrAA	TTyATGnsyAAC
3 annotated group(s): 40156 (Pax-8) [3.23E-06] 40156 (Pax-8) [8.37E-06] 50106 (p53) [4.14E-05] 0 'de novo' group(s)	29850	9.99E-01	CHROMOSOME_V:7,855,230-7,855,243	14	GrTTGATATGTGGA	TCCACATATCAAyC
0 annotated groups 0 'de novo' group(s)	29851	9.96E-01	CHROMOSOME_V:7,855,264-7,855,271	8	ACGAGTCC	GGACTCGT
1 annotated group(s): 50048 (Hen-1) [9.36E-06] 1 'de novo' group(s) 39	29852	9.97E-01	CHROMOSOME_V:7,855,291-7,855,302	12	GGAyACATAATC	GATTATGTrTCC
1 annotated group(s): 50048 (Hen-1) [9.36E-06] 2 'de novo' group(s) 22, 600	29853	9.96E-01	CHROMOSOME_V:7,855,296-7,855,307	12	yATCArCTGrTC	GAyCAGyTGATr
0 annotated groups 6 'de novo' group(s) 15, 34, 118, 753, 2628, 2013	29854	9.43E-01	CHROMOSOME_V:7,855,304-7,855,321	18	GrnAnAAnAACATGCAnn	nnTGCATGTTnTTnTnyC
0 annotated groups 2 'de novo' group(s) 15, 201	29855	9.97E-01	CHROMOSOME_V:7,855,316-7,855,330	15	nTCyTAwTGACAkGT	ACmTGTCAsTArGAn
0 annotated groups 0 'de novo' group(s)	29856	5.00E-01	CHROMOSOME_V:7,855,328-7,855,333	6	GGTyTA	TArACC
0 annotated groups 0 'de novo' group(s)	29857	9.71E-01	CHROMOSOME_V:7,855,374-7,855,385	12	TACAACAkTGTA	TACAmTGTTGTA
0 annotated groups 0 'de novo' group(s)	29858	9.94E-01	CHROMOSOME_V:7,855,396-7,855,407	12	TTGATATGTGGA	TCCACATATCAA
0 annotated groups 0 'de novo' group(s)	29859	9.99E-01	CHROMOSOME_V:7,855,430-7,855,447	18	TknnywwTmyACGCGCTk	mAGCGCGTrkAssrnnmA
0 annotated groups 0 'de novo' group(s)	29860	9.61E-01	CHROMOSOME_V:7,855,452-7,855,465	14	nnAAATGTGTGTTC	GAACACACATTTnn
0 annotated groups 0 'de novo' group(s)	29861	9.53E-01	CHROMOSOME_V:7,855,462-7,855,473	12	GTTTCTTTyTCT	AGArAAAGAAAC
0 annotated groups 0 'de novo' group(s)	29862	9.86E-01	CHROMOSOME_V:7,855,473-7,855,484	12	TGCGsCkwTGCC	GGCAsmGwCGCA
0 annotated groups 1 'de novo' group(s) 26	29863	9.41E-01	CHROMOSOME_V:7,855,488-7,855,499	12	nnsAAAmTGAwG	CsTCAkTTTwnn
0 annotated groups 1 'de novo' group(s) 42	29864	6.66E-01	CHROMOSOME_V:7,855,497-7,855,504	8	GTrAGTCr	yGACTyAC
0 annotated groups 3 'de novo' group(s) 1263, 2431, 1695	29865	9.96E-01	CHROMOSOME_V:7,855,504-7,855,523	20	kGrAnACATAATCGGTTTnn	nnAAACCGATTATGTnTyCm
1 annotated group(s): 50051 (Irf-2) [9.14E-05] 23 'de novo' group(s) 7, 12, 43, 100, 164, 245, 602, 945, 991, 2405, 1511, 2499, 2690, 2837, 2913, 2940, 3046, 3213, 1714, 1815, 1971, 2165, 2177	29866	8.64E-01	CHROMOSOME_V:7,855,555-7,855,634	80	TTCAGGGAGGTTGTCCA...	mTTCACTGGCGTCGAGA...
0 annotated groups 6 'de novo' group(s) 69, 368, 719, 1338, 2918, 1751	29867	9.61E-01	CHROMOSOME_V:7,855,630-7,855,649	20	TGnAGnCAArnTCGGTTwnA	TnsAACCGAnyTTGnCTnCA
0 annotated groups 6 'de novo' group(s) 25, 81, 832, 2485, 3000, 1697	29868	9.43E-01	CHROMOSOME_V:7,855,646-7,855,669	24	TACAACAGTGTATGCGA...	TTGrGAATCGCATACAC...
0 annotated groups 8 'de novo' group(s) 28, 125, 690, 2586, 3013, 3179, 1662, 2253	29869	9.27E-01	CHROMOSOME_V:7,855,670-7,855,703	34	AATCCACATATCAACCG...	GGTArATATCACGAGTC...
0 annotated groups 1 'de novo' group(s) 2667	29870	9.64E-01	CHROMOSOME_V:7,855,701-7,855,716	16	AyCATTTGTAAGTATn	nATACTTACAAATGrT
0 annotated groups 1 'de novo' group(s) 1860	29871	9.95E-01	CHROMOSOME_V:7,855,721-7,855,736	16	nAmsnTTTGwAnGTAT	ATACnTsCAAAnwkTn
0 annotated groups 0 'de novo' group(s)	29872	9.93E-01	CHROMOSOME_V:7,855,740-7,855,751	12	CATyCAAyATTs	wAATrTTGrATG
0 annotated groups 1 'de novo' group(s) 2841	29873	9.94E-01	CHROMOSOME_V:7,855,759-7,855,780	22	yCAGAAGACGrTCTAAA...	TTTTGTTTAGAyCGTCT...
0 annotated groups 0 'de novo' group(s)	29874	9.94E-01	CHROMOSOME_V:7,855,777-7,855,788	12	AAAGACGATCrA	TyGATCGTCTTT