Region for Gene ZK1290.14

This page describes one promoter-based search region.

The image shown below was created to provide context for this search region by showing a 100000 bp span of the genome, centered on this search region.

The first track shows the location of the search region in red. The last track shows known gene locations in this 100000 bp span of the genome.

This promoter-based search region is located close to a particular gene of interest, described in the table below. Click on the gene id to open a page at ensembl.org with more information about this gene.

The image shown below illustrates the location of the motifs and modules within this search region.
However, the number of modules in a region may exceed the genome browser's track limit. Thus, for each type of module (pattern), the text in the yellow box below indicates whether or not any modules of that type exist, and if so, whether or not all the modules of that type are displayed. (If it indicates that only the top 20 modules are displayed, this ranking is based on the number of instances of each module.)

User-specified filter settings do not affect the features displayed in the UCSC genome browser view.

About the patterns shown in this image:
There are no 'de novo' patterns to show.
There are no (TRANSFAC) annotation-based patterns to show.
There are no (JASPAR) annotation-based patterns to show.

Click on the image to view this region at UCSC.

This image uses the C.elegans genome assembly from Jan 2007. (UCSC ce4, WS170, Ensembl v45) and contains a number of custom tracks followed by several UCSC tracks. The custom tracks show: The long red and gray bar at the top shows the nominal 'search region' within which comparative genomics discovery methods were applied. Motif predictions were not made in coding exons and most types of repeats. In this database, the locations of masks applied to the search region are shown in gray. The numbered brown blocks are 'atomic' motifs, i.e. conserved DNA sequence motifs that were identified by discovery methods and post-processing operations. Motifs are shaded to indicate the discovery p-value; a darker motif was more significant at the discovery stage. Following the motif discovery stage, motifs were filtered by membership in co-occurring patterns, and patterns were ranked by genome-scale properties. Motifs instances that occur in highly-ranked putative regulatory modules may be more reliable predictions of functional genomic elements. The connected sets of blue boxes are co-occurring patterns, i.e. putative regulatory modules. Modules are shaded to indicate the number of times that a pattern is found in the target genome; a darker module is associated with more search regions. An pattern is called either 'de novo' or annotation-based, depending on the type of groups that appear in the pattern. (see next point) Before patterns (i.e. modules) can be identified from atomic motifs, groups of similar motifs must be found; modules are then identified as co-occurring 'group labels' that satisfy certain criteria. Such groups can be identified a) by annotating atomic motifs with known binding site resources from TRANSFAC, JASPAR or ORegAnno; or b) by 'de novo' clustering. Currently we show both types of patterns, but we consider annotation-based groups and patterns to be more reliable than 'de novo' groups and patterns. Work to improve genome-scale 'de novo' grouping is ongoing.

Showing 65 out of 65 atomic motifs.

Group(s) crtCele#(name) [p-value]	Motif craCele#	Discovery p-value	Location	Width	(+)motif	(-)motif
0 annotated groups 0 'de novo' group(s)	157024	7.04E-02	CHROMOSOME_II:7,554,775-7,554,782	8	TkCTCTTT	AAAGAGmA
0 annotated groups 0 'de novo' group(s)	157023	9.80E-02	CHROMOSOME_II:7,554,788-7,554,797	10	TGAATAATCG	CGATTATTCA
0 annotated groups 0 'de novo' group(s)	157022	4.24E-01	CHROMOSOME_II:7,554,816-7,554,828	13	TTTTGCTCTTTTT	AAAAAGAGCAAAA
0 annotated groups 0 'de novo' group(s)	157021	4.98E-01	CHROMOSOME_II:7,554,838-7,554,851	14	TAGTCTyTTGCCAC	GTGGCAArAGACTA
0 annotated groups 0 'de novo' group(s)	157020	5.48E-02	CHROMOSOME_II:7,554,889-7,554,898	10	AGTTATCAAT	ATTGATAACT
0 annotated groups 3 'de novo' group(s) 1, 82, 612	157019	3.98E-01	CHROMOSOME_II:7,554,909-7,554,926	18	CGTGTCCGCTTATCTArA	TyTAGATAAGCGGACACG
0 annotated groups 0 'de novo' group(s)	157018	4.74E-01	CHROMOSOME_II:7,554,926-7,554,937	12	yTTTGGGTkTGT	ACAmACCCAAAr
1 annotated group(s): 30001 (11997337-HSAS) [4.94E-05] 1 'de novo' group(s) 233	157017	4.99E-01	CHROMOSOME_II:7,554,943-7,554,967	25	nTkkkCCTCGTGACAAC...	AnrGTGACGTTGTCACG...
0 annotated groups 2 'de novo' group(s) 1162, 1970	157016	7.57E-01	CHROMOSOME_II:7,554,972-7,554,988	17	sGTTTACCTCACyTCnn	nnGArGTGAGGTAAACw
0 annotated groups 0 'de novo' group(s)	157015	4.74E-01	CHROMOSOME_II:7,554,984-7,554,995	12	wGAACAyCGTTT	AAACGrTGTTCs
1 annotated group(s): 40045 (COUP) [7.60E-07] 2 'de novo' group(s) 49, 1386	157014	3.72E-01	CHROMOSOME_II:7,554,994-7,555,007	14	yTTTTCGGCGAkyG	CrmTCGCCGAAAAr
3 annotated group(s): 40045 (COUP) [7.60E-07] 50074 (RXR-VDR) [7.43E-05] 30004 (15492775-EARLY-2) [8.98E-05] 3 'de novo' group(s) 20, 1531, 2166	157013	2.01E-01	CHROMOSOME_II:7,555,007-7,555,034	28	ATACCGTCACTTTGTGA...	GAGGTTCAGGGTCACAA...
0 annotated groups 1 'de novo' group(s) 199	157012	8.67E-02	CHROMOSOME_II:7,555,036-7,555,047	12	nCACACCCAAAr	yTTTGGGTGTGn
5 annotated group(s): 40063 (E47) [1.48E-06] 40056 (E12) [6.57E-06] 40089 (HEB) [8.32E-06] ... 2 'de novo' group(s) 18, 823	157011	3.16E-01	CHROMOSOME_II:7,555,057-7,555,076	20	ATCAGnAnGTGTTCTyTnAT	ATnArAGAACACnTnCTGAT
3 annotated group(s): 40173 (RFX1) [8.36E-06] 50029 (Evi-1) [5.45E-05] 30010 (ELT-2) [1.12E-04] 0 'de novo' group(s)	157010	1.29E-01	CHROMOSOME_II:7,555,074-7,555,081	8	CTyTTATC	GATAArAG
0 annotated groups 0 'de novo' group(s)	157009	9.30E-01	CHROMOSOME_II:7,555,084-7,555,100	17	nnnGTCAGTTTATCTnn	nnAGATAAACTGACnnn
1 annotated group(s): 40210 (XPF-1) [3.79E-06] 0 'de novo' group(s)	157008	9.32E-01	CHROMOSOME_II:7,555,119-7,555,134	16	nACnATTTCAGCTGAA	TTCAGCTGAAATnGTn
3 annotated group(s): 40048 (CREB) [2.28E-06] 40065 (E4F1) [9.34E-06] 50018 (CREB) [1.37E-05] 2 'de novo' group(s) 21, 157	157007	9.27E-01	CHROMOSOME_II:7,555,131-7,555,146	16	TTTCGTGnCCkCTTAT	ATAAGmGGnCACGAAA
1 annotated group(s): 50019 (Chop-cEBP) [1.47E-05] 0 'de novo' group(s)	157006	3.72E-01	CHROMOSOME_II:7,555,147-7,555,160	14	GCwTCTCrwATTTC	GAAATsyGAGAsGC
1 annotated group(s): 50019 (Chop-cEBP) [1.47E-05] 0 'de novo' group(s)	157005	4.74E-01	CHROMOSOME_II:7,555,154-7,555,165	12	ACnTTTCACCTC	GAGGTGAAAnGT
1 annotated group(s): 50019 (Chop-cEBP) [1.47E-05] 0 'de novo' group(s)	157004	3.79E-01	CHROMOSOME_II:7,555,160-7,555,176	17	CTACTATGTTCnCATTG	CAATGnGAACATAGTAG
0 annotated groups 2 'de novo' group(s) 34, 2191	157003	8.47E-01	CHROMOSOME_II:7,555,188-7,555,206	19	CACGCCTTCGAGTCrCTTC	GAAGyGACTCGAAGGCGTG
0 annotated groups 2 'de novo' group(s) 34, 1805	157002	9.42E-01	CHROMOSOME_II:7,555,200-7,555,211	12	GTGTyCAnnTGT	ACAnnTGrACAC
3 annotated group(s): 50065 (PPARgamma-RXRal) [3.44E-06] 40167 (PPAR-alpha) [5.86E-06] 30004 (15492775-EARLY-2) [5.07E-05] 0 'de novo' group(s)	157001	4.95E-01	CHROMOSOME_II:7,555,221-7,555,234	14	rAGGyrAAAGGTCA	TGACCTTTyrCCTy
0 annotated groups 0 'de novo' group(s)	157000	1.40E-01	CHROMOSOME_II:7,555,318-7,555,325	8	TGCTCTTT	AAAGAGCA
0 annotated groups 0 'de novo' group(s)	156999	8.76E-01	CHROMOSOME_II:7,555,344-7,555,366	23	GGTCACAAAGTGACnGT...	AAnAATACnGTCACTTT...
0 annotated groups 0 'de novo' group(s)	156998	8.80E-01	CHROMOSOME_II:7,555,374-7,555,385	12	GTGACCCTGAAC	GTTCAGGGTCAC
0 annotated groups 0 'de novo' group(s)	156997	2.70E-01	CHROMOSOME_II:7,555,387-7,555,400	14	CTTTGAACATTTGG	CCAAATGTTCAAAG
5 annotated group(s): 40154 (Pax-5) [2.31E-06] 40026 (c-Ets-1) [5.81E-06] 40145 (NRF-2) [9.34E-06] ... 3 'de novo' group(s) 20, 749, 1920	156996	5.36E-01	CHROMOSOME_II:7,555,409-7,555,425	17	nnAAGnTTmCGGTCACT	AGTGACCGkAAnCTTnn
5 annotated group(s): 40154 (Pax-5) [2.31E-06] 40026 (c-Ets-1) [5.81E-06] 40196 (Stra13) [9.31E-06] ... 0 'de novo' group(s)	156995	7.84E-01	CHROMOSOME_II:7,555,418-7,555,431	14	GTGACCGnAAGCwT	AsGCTTnCGGTCAC
2 annotated group(s): 40154 (Pax-5) [2.31E-06] 40196 (Stra13) [9.31E-06] 3 'de novo' group(s) 2, 86, 684	156994	7.51E-01	CHROMOSOME_II:7,555,425-7,555,437	13	nkCCACGTGAsTA	TAwTCACGTGGmn
0 annotated groups 0 'de novo' group(s)	156993	8.72E-01	CHROMOSOME_II:7,555,442-7,555,453	12	ACAnTTGrACAC	GTGTyCAAnTGT
0 annotated groups 2 'de novo' group(s) 73, 1460	156992	5.23E-01	CHROMOSOME_II:7,555,450-7,555,462	13	GATAAGCGGACAC	GTGTCCGCTTATC
0 annotated groups 2 'de novo' group(s) 42, 1045	156991	5.00E-01	CHROMOSOME_II:7,555,457-7,555,468	12	nTGAGTCATAnn	nnTATGACTCAn
0 annotated groups 0 'de novo' group(s)	156990	6.85E-01	CHROMOSOME_II:7,555,477-7,555,488	12	TGnTAGTCAGrr	yyCTGACTAnCA
0 annotated groups 2 'de novo' group(s) 7, 376	156989	4.95E-01	CHROMOSOME_II:7,555,489-7,555,502	14	GTGACAACGTCACT	AGTGACGTTGTCAC
0 annotated groups 0 'de novo' group(s)	156988	4.98E-01	CHROMOSOME_II:7,555,539-7,555,552	14	GAAGACGTTTCACA	TGTGAAACGTCTTC
1 annotated group(s): 40179 (S8) [2.79E-06] 0 'de novo' group(s)	156987	6.80E-01	CHROMOSOME_II:7,555,557-7,555,573	17	TGATTCAATTATnwTrn	nyAsnATAATTGAATCA
3 annotated group(s): 40131 (NF-1) [2.98E-06] 50017 (COUP-TF) [3.07E-05] 30004 (15492775-EARLY-2) [5.07E-05] 6 'de novo' group(s) 30, 43, 71, 320, 459, 715	156986	8.50E-01	CHROMOSOME_II:7,555,582-7,555,609	28	AAsGknmnTTTTnGGGC...	GCGmGAGCGACGCCCnA...
1 annotated group(s): 40131 (NF-1) [2.98E-06] 1 'de novo' group(s) 43	156984	7.04E-02	CHROMOSOME_II:7,555,590-7,555,597	8	GGGsCGTC	GACGwCCC
1 annotated group(s): 40131 (NF-1) [2.98E-06] 1 'de novo' group(s) 43	156985	8.67E-02	CHROMOSOME_II:7,555,590-7,555,595	6	GGCGTC	GACGCC
3 annotated group(s): 40131 (NF-1) [2.98E-06] 50017 (COUP-TF) [3.07E-05] 30004 (15492775-EARLY-2) [5.07E-05] 0 'de novo' group(s)	156983	2.74E-01	CHROMOSOME_II:7,555,603-7,555,619	17	GrTGTTTTCAACGGTCA	TGACCGTTGAAAACAyC
1 annotated group(s): 30006 (CEH-10) [5.69E-05] 0 'de novo' group(s)	156981	6.93E-02	CHROMOSOME_II:7,555,615-7,555,648	34	CACACAAATAAACTAAT...	ACATCGAAAATCATyAA...
0 annotated groups 0 'de novo' group(s)	156980	4.02E-01	CHROMOSOME_II:7,555,656-7,555,668	13	TTnGTGTCCnTyT	ArAnGGACACnAA
0 annotated groups 0 'de novo' group(s)	156979	3.72E-01	CHROMOSOME_II:7,555,686-7,555,699	14	TGCTCTTTTTGCTC	GAGCAAAAAGAGCA
0 annotated groups 0 'de novo' group(s)	156978	4.91E-02	CHROMOSOME_II:7,555,694-7,555,705	12	AAACGGTGTTCT	AGAACACCGTTT
0 annotated groups 1 'de novo' group(s) 47	156977	7.47E-02	CHROMOSOME_II:7,555,726-7,555,739	14	rTCTCTATGGCTCC	GGAGCCATAGAGAy
0 annotated groups 0 'de novo' group(s)	156976	1.00E-08	CHROMOSOME_II:7,555,737-7,555,762	26	AAAGAGCAAAAAGAGCA...	GATGGCTTTTGCTCTTT...
0 annotated groups 0 'de novo' group(s)	156975	4.95E-01	CHROMOSOME_II:7,555,770-7,555,779	10	AsTTATCAAT	ATTGATAAwT
1 annotated group(s): 50009 (Brachyury) [7.68E-05] 4 'de novo' group(s) 135, 585, 681, 1714	156974	6.74E-01	CHROMOSOME_II:7,555,788-7,555,815	28	mmCsnTkrmsGsCCCGT...	TCAGAAGATTTACGGGw...
0 annotated groups 5 'de novo' group(s) 11, 137, 391, 741, 852	156973	2.03E-01	CHROMOSOME_II:7,555,821-7,555,854	34	TTTCACACGCCTTCGAG...	TwrCGAATGCGAAGyGA...
2 annotated group(s): 50069 (Pax6) [1.55E-05] 50074 (RXR-VDR) [2.94E-05] 1 'de novo' group(s) 32	156972	1.26E-01	CHROMOSOME_II:7,555,860-7,555,881	22	ACCGATTATTCACGCGn...	CTTTGnCGCGTGAATAA...
0 annotated groups 0 'de novo' group(s)	156971	7.04E-02	CHROMOSOME_II:7,555,893-7,555,900	8	TTTTCTCT	AGAGAAAA
0 annotated groups 0 'de novo' group(s)	156970	4.95E-01	CHROMOSOME_II:7,555,960-7,555,969	10	CTTTTkCTCT	AGAGmAAAAG
0 annotated groups 0 'de novo' group(s)	156969	8.56E-01	CHROMOSOME_II:7,555,975-7,555,984	10	GTTTACsTCA	TGAwGTAAAC
0 annotated groups 1 'de novo' group(s) 1322	156968	7.51E-01	CHROMOSOME_II:7,555,989-7,556,004	16	TyAyCTCTnACTATCA	TGATAGTnAGAGrTrA
5 annotated group(s): 40098 (HNF-4) [2.03E-06] 40045 (COUP) [3.09E-06] 40099 (HNF-4alpha1) [6.60E-06] ... 0 'de novo' group(s)	156967	1.93E-01	CHROMOSOME_II:7,556,007-7,556,024	18	CCAAATGTTCAAAGTTCA	TGAACTTTGAACATTTGG
0 annotated groups 0 'de novo' group(s)	156966	1.07E-01	CHROMOSOME_II:7,556,037-7,556,050	14	ATTAAAnATGTAGG	CCTACATnTTTAAT
0 annotated groups 0 'de novo' group(s)	156965	4.68E-01	CHROMOSOME_II:7,556,052-7,556,061	10	GTGTyCTCTT	AAGAGrACAC
0 annotated groups 0 'de novo' group(s)	156964	7.12E-01	CHROMOSOME_II:7,556,065-7,556,076	12	CACTTTGTGACC	GGTCACAAAGTG
0 annotated groups 1 'de novo' group(s) 8	156963	1.98E-01	CHROMOSOME_II:7,556,089-7,556,102	14	TTCAGTTTGCAmAC	GTkTGCAAACTGAA
2 annotated group(s): 40204 (TFII-I) [9.08E-06] 50018 (CREB) [3.06E-05] 2 'de novo' group(s) 72, 240	156962	2.56E-01	CHROMOSOME_II:7,556,124-7,556,132	9	rTGACGTAr	yTACGTCAy
0 annotated groups 1 'de novo' group(s) 17	156961	1.40E-01	CHROMOSOME_II:7,556,159-7,556,166	8	CACACGCC	GGCGTGTG
0 annotated groups 0 'de novo' group(s)	156960	1.40E-01	CHROMOSOME_II:7,556,172-7,556,179	8	ATTAGTTT	AAACTAAT
0 annotated groups 0 'de novo' group(s)	156959	7.12E-01	CHROMOSOME_II:7,556,188-7,556,199	12	GCTTACnTCAnC	GnTGAnGTAAGC