This motif group represents a conserved DNA sequence motif. In general, a conserved motif may be a transcription factor binding site (TFBS), or another type of functional genomic element. CisRED transforms atomic motifs into two types of groups. Annotation-based groups are identified by annotating atomic motifs with known site sequences from resources like TRANSFAC, JASPAR and ORegAnno. 'De novo' groups are identified by computational clustering of atomic motifs.

Pairwise motif similarities were calculated with a shared information content metric. Similar groups of motifs were identified by the OPTICS hierarchical clustering algorithm. OPTICS' reachability output was segmented by the BOSS algorithm, and clusters were extracted from the BOSS output.

• Each row describes an atomic motif with a discovery p-value is < 1.0.
• Click on an atomic motif ID to get detailed information on that motif, including a list of all groups and patterns in which it is found.
• Click on a search region name to open a page that describes the search region, and lists all the motifs found in that region.
• Every pattern, i.e. co-occurring set of motif group labels, listed in the patterns column contains the atomic motif as a representative of the group shown in this page.