FILTERS:
pvalue:1.0
Motif craCele153295
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craCele153295
Discovery p-value 9.86E-01
Motif location CHROMOSOME_I: 886,969-886,984 (+) (16 bp)
Search region location CHROMOSOME_I: 886,167-888,153 (+) (1,987 bp)
Assembly C.elegans, Ensembl v45 (WS170)
Found in 4 species: C elegans, C remanei, C japonica, C briggsae
Found with
'De Novo' motif group ID crtCele: 70, 499
Similar to
(annotation p-value)		 There are 0 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (0 annot.): none
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 No annotation-based modules exist in this database.
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence CTACGAnyswwnnnnn nnnnnsswrnTCGTAG
Position frequency matrix
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
A 0 0 4 0 0 4 2 0 0 2 2 1 1 2 1 2
C 4 0 0 4 0 0 0 2 2 0 0 1 0 1 0 1
G 0 1 0 0 4 0 1 0 2 0 0 0 2 0 2 1
T 0 3 0 0 0 0 1 2 0 2 2 2 1 1 1 0
C T A C G A n y s w w n n n n n
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
A 0 1 1 1 2 2 2 0 2 1 0 0 0 0 3 0
C 1 2 0 2 0 0 0 2 0 1 0 4 0 0 1 0
G 1 0 1 0 1 0 0 2 2 0 0 0 4 0 0 4
T 2 1 2 1 1 2 2 0 0 2 4 0 0 4 0 0
n n n n n w w s r n T C G T A G
Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
Y95B8A.6b Target C elegans CHROMOSOME_I:886,969-886,984 + CTACGAGCCTACGCGC – GCGCGTAGGCTCGTAG
Y95B8A.6b_Crem_c1 Orthologue C remanei supercontigs.fa.Contig34:453,137-453,152 – CTACGATTGTTTGTTG + CAACAAACAATCGTAG
Y95B8A.6b_Cjap_c1 Orthologue C japonica supercontigs.fa.Contig389:43,390-43,405 – CGACGAATCATAAAAA + TTTTTATGATTCGTCG
Y95B8A.6b_Cbri_c1 Orthologue C briggsae assembly.fasta.chrI:708,203-708,218 + CTACGAACGAATTAGA – TCTAATTCGTTCGTAG

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