Motif craCele29816 |
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Currently, this page only shows information about a motif if it:
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Currently, this page only shows information about a motif if it:
+ has a discovery p-value < 1.0
Filters based on species and motif discovery algorithms are not applied to the contents of this page.
This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.
Page ContentsOverviewSequence Conservation |
| Motif overview | |
| craCele29816 | |
| Discovery p-value | 9.95E-01 |
| CHROMOSOME_V: 7,854,619-7,854,646 (+) (28 bp) | |
| CHROMOSOME_V: 7,854,290-7,855,789 (+) (1,500 bp) | |
| C.elegans, Ensembl v45 (WS170) | |
| 8 species: C elegans, C remanei, C japonica, C brenneri, C briggsae, B malayi, T spiralis, P pacificus | |
| crtCele: 77, 624, 1186, 2669, 1817 | |
(annotation p-value) |
There are
1 annotation(s)
with p-values below 0.001. JASPAR: (1 annot.): Tal1beta-E47S(5.36E-05) TRANSFAC: (0 annot.): none ORegAnno: (0 annot.): none |
| Modules |
No annotation-based modules exist in this database.
No 'de novo' modules exist in this database. |
Sequence Conservation
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| kwnAGACGsAGGTkGTy... | snnGTTyTCkGrACmAC... | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Position frequency matrix
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| Site Sequence Stack | |||||||
| Ensembl gene ID | Type | Species | Position | Std | (+)Sequence | Std | (-)Sequence |
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| C37C3.2c | Target | C elegans | CHROMOSOME_V:7,854,619-7,854,646 | + | GAGAGGCGCAGATGGTT... | – | AGTGTTCTCTGAACCAT... |
| C37C3.2c_Crem_c1 | Orthologue | C remanei | supercontigs.fa.Contig3:1,434,181-1,434,208 | – | GTGAGACGCAGGTGGTT... | + | AGTGTTCTCTGAACCAC... |
| C37C3.2c_Cjap_c1 | Orthologue | C japonica | supercontigs.fa.Contig87:128,931-128,958 | + | GAAATTCGGAGAATGTT... | – | AGACCGATCGGAACATT... |
| C37C3.2c_Cbre_c1 | Orthologue | C brenneri | supercontigs.fa.Contig25:787,147-787,174 | + | TTGAGACGCAGGTGGTT... | – | AGTGTTCTCTGAACCAC... |
| C37C3.2c_Cbri_c1 | Orthologue | C briggsae | assembly.fasta.chrV:2,184,866-2,184,893 | – | AAGAGACGCAGGTGGTT... | + | TCTGTTCTATGAACCAC... |
| C37C3.2c_Bmal_c1 | Orthologue | B malayi | supercontigs.fa.bma1.assembly.12:13,255-13,282 | – | TTTTTAGGGAGGTTGTC... | + | TTCGTTTTCGTGACAAC... |
| C37C3.2c_Tspi_c1 | Orthologue | T spiralis | supercontigs.fa.Contig2:688,236-688,263 | + | GCCCGTCGGCGGTCGTC... | – | CAATTATTCTCGACGAC... |
| C37C3.2c_Ppac_c1 | Orthologue | P pacificus | supercontigs.fa.Contig225:6,995-7,022 | + | TTTGCAGGGCGGTTGTC... | – | TCCTCTTTCGTGACAAC... |