FILTERS:
pvalue:1.0
Motif craCele82776
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craCele82776
Discovery p-value 4.86E-02
Motif location CHROMOSOME_III: 6,929,188-6,929,201 (-) (14 bp)
Search region location CHROMOSOME_III: 6,928,747-6,930,073 (-) (1,327 bp)
Assembly C.elegans, Ensembl v45 (WS170)
Found in 4 species: C elegans, C remanei, C brenneri, C briggsae
Found with
'De Novo' motif group ID crtCele: 624, 3039, 1817
Similar to
(annotation p-value)		 There are 3 annotation(s) with p-values below 0.001.
JASPAR: (1 annot.): Tal1beta-E47S(2.56E-05)
TRANSFAC: (2 annot.): AR(2.39E-06) ,    Lmo2(5.06E-06)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 No annotation-based modules exist in this database.
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence GCAGATGGTGTTCT AGAACACCATCTGC
Position frequency matrix
1 2 3 4 5 6 7 8 9 10 11 12 13 14
A 0 0 4 0 4 0 0 0 0 0 0 0 0 0
C 0 4 0 0 0 0 0 0 1 0 0 0 4 0
G 4 0 0 4 0 0 4 4 0 4 0 0 0 0
T 0 0 0 0 0 4 0 0 3 0 4 4 0 4
G C A G A T G G T G T T C T
1 2 3 4 5 6 7 8 9 10 11 12 13 14
A 4 0 4 4 0 3 0 0 4 0 0 0 0 0
C 0 0 0 0 4 0 4 4 0 0 4 0 0 4
G 0 4 0 0 0 1 0 0 0 0 0 0 4 0
T 0 0 0 0 0 0 0 0 0 4 0 4 0 0
A G A A C A C C A T C T G C
Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
F57B9.7a Target C elegans CHROMOSOME_III:6,929,188-6,929,201 + GCAGATGGTGTTCT – AGAACACCATCTGC
F57B9.7a_Crem_c1 Orthologue C remanei supercontigs.fa.Contig28:44,341-44,354 – GCAGATGGTGTTCT + AGAACACCATCTGC
F57B9.7a_Cbre_c1 Orthologue C brenneri supercontigs.fa.Contig5:1,375,308-1,375,321 – GCAGATGGTGTTCT + AGAACACCATCTGC
F57B9.7a_Cbri_c1 Orthologue C briggsae assembly.fasta.chrIII:5,806,097-5,806,110 + GCAGATGGCGTTCT – AGAACGCCATCTGC

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