FILTERS:
pvalue:1.0
Motif craCele99856
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craCele99856
Discovery p-value 8.16E-02
Motif location CHROMOSOME_III: 8,767,498-8,767,514 (+) (17 bp)
Search region location CHROMOSOME_III: 8,767,116-8,768,220 (+) (1,105 bp)
Assembly C.elegans, Ensembl v45 (WS170)
Found in 4 species: C elegans, C remanei, C brenneri, C briggsae
Found with
'De Novo' motif group ID crtCele: 43, 91, 231, 578, 3025
Similar to
(annotation p-value)		 There are 0 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (0 annot.): none
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 No annotation-based modules exist in this database.
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence rATCGACGCCGACGTTG CAACGTCGGCGTCGATy
Position frequency matrix
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
A 2 3 0 0 0 4 0 0 0 0 0 4 0 1 0 0 0
C 0 0 1 3 1 0 4 0 4 4 1 0 3 0 0 1 0
G 2 1 0 1 3 0 0 4 0 0 3 0 1 3 0 0 4
T 0 0 3 0 0 0 0 0 0 0 0 0 0 0 4 3 0
r A T C G A C G C C G A C G T T G
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
A 0 3 4 0 0 0 0 0 0 0 0 0 0 0 3 0 0
C 4 0 0 3 1 0 3 0 0 4 0 0 3 1 0 1 2
G 0 1 0 0 3 0 1 4 4 0 4 0 1 3 1 0 0
T 0 0 0 1 0 4 0 0 0 0 0 4 0 0 0 3 2
C A A C G T C G G C G T C G A T y
Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
PAR2.1 Target C elegans CHROMOSOME_III:8,767,498-8,767,514 + GATCGACGCCGACGTTG – CAACGTCGGCGTCGATC
PAR2.1_Crem_c1 Orthologue C remanei supercontigs.fa.Contig97:3,750-3,766 + AATCGACGCCGACATCG – CGATGTCGGCGTCGATT
PAR2.1_Cbre_c1 Orthologue C brenneri supercontigs.fa.Contig7:1,220,376-1,220,392 + AGCGCACGCCCAGGTTG – CAACCTGGGCGTGCGCT
PAR2.1_Cbri_c1 Orthologue C briggsae assembly.fasta.chrIII:9,081,737-9,081,753 – GATCGACGCCGACGTTG + CAACGTCGGCGTCGATC

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