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Mouse database update: Size1 kB Last Modified2007-09-27 10:20:31

The mouse v3.1 database now contains FoxA1 annotations.
Improved browse/search for motif groups and modules: Size1 kB Last Modified2007-09-27 10:20:54

It is easier to browse and search groups of similar motifs and putative regulatory modules, and results are more informative.
Browse STAT1 ChIP-seq database by chromosome: Size1 kB Last Modified2007-09-27 10:23:07

You can now browse peak sets from 15M reads on UCSC-linked whole chromosome views.
Human v8.1, mouse v2.1, and rat v1.1 at db.cisred.org: Size1 kB Last Modified2007-07-27 09:27:24

The three databases that were updated to hold predicted regulatory modules are now available on our public MySQL server.
C. elegans v1 at db.cisred.org: Size1 kB Last Modified2007-06-14 12:11:33

A new database has been added to our public MySQL server.
New rat v1.1 database: Size1 kB Last Modified2007-09-27 10:21:10

The updated rat database now offers predicted regulatory modules.
New mouse v3 database: Size1 kB Last Modified2007-09-27 10:21:31

The new mouse database offers regulatory modules predicted with sequence data from 38 vertebrate species.
Improved web site filtering: Size1.5 kB Last Modified2007-09-27 10:21:45

cisRED filtering options now support browsing multiple databases.
Browse a ranked list of all modules: Size1 kB Last Modified2007-09-27 10:22:01

The home page of each database now provides access to a ranked list of all the modules in that database.
New human STAT1 ChIP-seq peaks database: Size1 kB Last Modified2007-09-27 10:23:26

In this database, search regions are peaks identified by chromatin immunoprecipitation and Solexa sequencing.
Human database updated to 8.3: Size1.3 kB Last Modified2007-07-27 09:28:10

The human database now associates Gene Ontology terms with annotation-based modules.
New human v8.2 database: Size1 kB Last Modified2007-06-08 10:45:47

The updated human database now offers predicted regulatory modules with combinatorial p-value scores.
Improved search tools: Size1 kB Last Modified2007-06-13 17:13:51

You can now use IUPAC symbols in a motif search, or can search by cisRED group ID or cisRED module ID.
Search region masks: Size1.1 kB Last Modified2007-06-14 12:06:52

Our UCSC genome browser images now show the search region masks.
Browse by location: Size1 kB Last Modified2007-06-20 15:39:15

You can now find all search regions that overlap a genomic region defined by coordinates.
New browse/search options for the mouse database: Size1 kB Last Modified2007-06-20 15:43:50

You can now browse/search modules using GO terms, and by chromosome.
New C. elegans v2 database: Size1 kB Last Modified2008-04-11 12:00:07

The new C. elegans database is based on the latest release of this genome.
New human v9 database: Size1 kB Last Modified2007-07-27 09:25:32

The new human database offers regulatory modules predicted with sequence data from 41 vertebrate species.
New mouse v4 database: Size1 kB Last Modified2007-09-27 11:52:30

The v3.1 motif coordinates were 'lifted' to the NCBI m37 (mm9) assembly. The v4 motifs are compatible with (and will be available at) Ensembl 47.
New C. elegans v3 database: Size1 kB Last Modified2008-07-24 10:31:10

The new C. elegans database contains high-quality motifs from MotifSampler only.
C. elegans v4 database: Size1 kB Last Modified2008-07-18 09:45:03

This version of the C. elegans cisRED database features 8 nematode genomes and 3847 highly conserved transcripts.
C. elegans v4 tables are now public: Size1 kB Last Modified2008-08-25 16:00:03

The new C. elegans database has been added to our public MySQL server.