cisRED: cis-regulatory element database

cisRED > Human 9 > gene. ENSG00000071282 > craHsap127389

Motif craHsap127389

More information about this gene at Ensembl.org

The contents of this page can be modified by changing your filter settings.
Currently, this page only shows information about a motif if it:
+ has a discovery p-value < 0.1
Filters based on species and motif discovery algorithms are not applied to the contents of this page.

This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation

Motif overview
Atomic motif id	craHsap127389
Discovery p-value	3.42E-03
Motif location	chr3: 8,517,606-8,517,611 (+) (6 bp)
Search region location	chr3: 8,517,001-8,518,710 (+) (1,710 bp)
Assembly	Human, Ensembl v40 (NCBI 36)
Found in	10 species: Loxodonta africana, Echinops telfairi, Bos taurus, Canis familiaris, Dasypus novemcinctus, Felis catus, Oryctolagus cuniculus, Mus musculus, Rattus norvegicus, Homo sapiens
Found with	Consensus.omops
'De Novo' motif group ID	This motif was not submitted for clustering.
Similar to (annotation p-value)	There are 4 annotation(s) with p-values below 0.001. JASPAR: (1 annot.): RORalfa-2(5.54E-04) TRANSFAC: (3 annot.): HNF-3(1.62E-04) , PPAR-alpha(7.59E-04) , E4BP4(8.47E-04) ORegAnno: (0 annot.): none
Modules (Co-occurring motif patterns)	No annotation-based modules contain this motif. No 'de novo' modules exist in this database.

Sequence Conservation

Sequence logo

(+)motif

(-)motif

Consensus sequence

ATTTAT

ATAAAT

Position frequency matrix

	1	2	3	4	5	6
A	10	0	0	0	10	0
C	0	0	0	0	0	0
G	0	0	0	0	0	0
T	0	10	10	10	0	10
	A	T	T	T	A	T

Transfac

Jaspar

CSV

	1	2	3	4	5	6
A	10	0	10	10	10	0
C	0	0	0	0	0	0
G	0	0	0	0	0	0
T	0	10	0	0	0	10
	A	T	A	A	A	T

Transfac

Jaspar

CSV

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Ensembl gene ID	Type	Species	Position	Std	(+)Sequence	Std	(-)Sequence
Site Sequence Stack
ENSG00000071282_LAFR	Orthologue	Loxodonta africana	scaffold_13600:121-126	+	ATTTAT	–	ATAAAT
ENSG00000071282_ETEL	Orthologue	Echinops telfairi	scaffold_320463:84,150-84,155	–	ATTTAT	+	ATAAAT
ENSG00000071282_BTAU	Orthologue	Bos taurus	chr22:7,817,340-7,817,345	+	ATTTAT	–	ATAAAT
ENSG00000071282_CFAM	Orthologue	Canis familiaris	chr20:12,585,910-12,585,915	–	ATTTAT	+	ATAAAT
ENSG00000071282_DNOV	Orthologue	Dasypus novemcinctus	scaffold_213549:273-278	+	ATTTAT	–	ATAAAT
ENSG00000071282_FCAT	Orthologue	Felis catus	ENSG00000071282_FCAT:96-101	+	ATTTAT	–	ATAAAT
ENSG00000071282_OCUN	Orthologue	Oryctolagus cuniculus	scaffold_212360:30,722-30,727	–	ATTTAT	+	ATAAAT
ENSG00000071282_MMUS	Orthologue	Mus musculus	chr6:112,239,209-112,239,214	+	ATTTAT	–	ATAAAT
ENSG00000071282_RNOR	Orthologue	Rattus norvegicus	chr4:148,071,043-148,071,048	+	ATTTAT	–	ATAAAT
ENSG00000071282	Target	Homo sapiens	chr3:8,517,606-8,517,611	+	ATTTAT	–	ATAAAT

Export Site Sequences Stack