cisRED: cis-regulatory element database

cisRED > Human 9 > gene. ENSG00000085377 > craHsap132728

Motif craHsap132728

More information about this gene at Ensembl.org

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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation

Motif overview
Atomic motif id	craHsap132728
Discovery p-value	3.36E-03
Motif location	chr6: 105,958,526-105,958,531 (-) (6 bp)
Search region location	chr6: 105,957,463-105,959,459 (-) (1,997 bp)
Assembly	Human, Ensembl v40 (NCBI 36)
Found in	9 species: Pongo pygmaeus, Macaca mulatta, Pteropus vampyrus, Equus caballus, Felis catus, Choloepus hoffmanni, Rattus norvegicus, Homo sapiens, Monodelphis domestica
Found with	Consensus.omops, Consensus.zmops
'De Novo' motif group ID	This motif was not submitted for clustering.
Similar to (annotation p-value)	There are 1 annotation(s) with p-values below 0.001. JASPAR: (0 annot.): none TRANSFAC: (1 annot.): Cdc5(3.60E-05) ORegAnno: (0 annot.): none
Modules (Co-occurring motif patterns)	Annotation-based: 175 (Cdc5__FOXJ2) 256 (CUTL1__Cdc5) 672 (Cdc5__POU1F1) 1218 (Cdc5__HNF-3) 1786 (Cdc5__OCA-B) 2362 (Cdc5__POU2F1) No 'de novo' modules exist in this database.

Sequence Conservation

Sequence logo

(+)motif

(-)motif

Consensus sequence

TTTATA

TATAAA

Position frequency matrix

	1	2	3	4	5	6
A	0	0	0	9	0	9
C	0	0	0	0	0	0
G	0	0	0	0	0	0
T	9	9	9	0	9	0
	T	T	T	A	T	A

Transfac

Jaspar

CSV

	1	2	3	4	5	6
A	0	9	0	9	9	9
C	0	0	0	0	0	0
G	0	0	0	0	0	0
T	9	0	9	0	0	0
	T	A	T	A	A	A

Transfac

Jaspar

CSV

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Ensembl gene ID	Type	Species	Position	Std	(+)Sequence	Std	(-)Sequence
Site Sequence Stack
ENSG00000085377_PPYG	Orthologue	Pongo pygmaeus	ENSG00000085377_PPYG:430-435	+	TTTATA	–	TATAAA
ENSG00000085377_MMUL	Orthologue	Macaca mulatta	chr4:101,416,431-101,416,436	+	TTTATA	–	TATAAA
ENSG00000085377_PVAM	Orthologue	Pteropus vampyrus	ENSG00000085377_PVAM:182-187	–	TTTATA	+	TATAAA
ENSG00000085377_ECAB	Orthologue	Equus caballus	ENSG00000085377_ECAB:313-318	–	TTTATA	+	TATAAA
ENSG00000085377_FCAT	Orthologue	Felis catus	ENSG00000085377_FCAT:476-481	–	TTTATA	+	TATAAA
ENSG00000085377_CHOF	Orthologue	Choloepus hoffmanni	ENSG00000085377_CHOF:567-572	–	TTTATA	+	TATAAA
ENSG00000085377_RNOR	Orthologue	Rattus norvegicus	chr20:49,023,881-49,023,886	+	TTTATA	–	TATAAA
ENSG00000085377	Target	Homo sapiens	chr6:105,958,526-105,958,531	+	TTTATA	–	TATAAA
ENSG00000085377_MDOM	Orthologue	Monodelphis domestica	chr2:369,563,654-369,563,659	–	TTTATA	+	TATAAA

Export Site Sequences Stack