cisRED: cis-regulatory element database

cisRED > Human 9 > gene. ENSG00000120910 > craHsap171152

Motif craHsap171152

More information about this gene at Ensembl.org

The contents of this page can be modified by changing your filter settings.
Currently, this page only shows information about a motif if it:
+ has a discovery p-value < 0.1
Filters based on species and motif discovery algorithms are not applied to the contents of this page.

This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation

Motif overview
Atomic motif id	craHsap171152
Discovery p-value	8.17E-03
Motif location	chr8: 22,353,513-22,353,527 (+) (15 bp)
Search region location	chr8: 22,351,842-22,354,740 (+) (2,899 bp)
Assembly	Human, Ensembl v40 (NCBI 36)
Found in	5 species: Pan troglodytes, Macaca mulatta, Mus musculus, Rattus norvegicus, Homo sapiens
Found with	Consensus.omops, Consensus.zmops
'De Novo' motif group ID	This motif was not submitted for clustering.
Similar to (annotation p-value)	There are 2 annotation(s) with p-values below 0.001. JASPAR: (0 annot.): none TRANSFAC: (2 annot.): IRF-1(3.16E-04) , Cdc5(5.65E-04) ORegAnno: (0 annot.): none
Modules (Co-occurring motif patterns)	No annotation-based modules contain this motif. No 'de novo' modules exist in this database.

Sequence Conservation

Sequence logo

(+)motif

(-)motif

Consensus sequence

AGTTTCAATATTTCA

TGAAATATTGAAACT

Position frequency matrix

	1	2	3	4	5	6	7	8	9	10	11	12	13	14	15
A	5	0	0	0	0	0	5	5	0	5	0	0	0	0	5
C	0	0	0	0	0	5	0	0	0	0	0	0	0	4	0
G	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0
T	0	0	5	5	5	0	0	0	5	0	5	5	5	1	0
	A	G	T	T	T	C	A	A	T	A	T	T	T	C	A

Transfac

Jaspar

CSV

	1	2	3	4	5	6	7	8	9	10	11	12	13	14	15
A	0	1	5	5	5	0	5	0	0	0	5	5	5	0	0
C	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0
G	0	4	0	0	0	0	0	0	0	5	0	0	0	0	0
T	5	0	0	0	0	5	0	5	5	0	0	0	0	0	5
	T	G	A	A	A	T	A	T	T	G	A	A	A	C	T

Transfac

Jaspar

CSV

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Ensembl gene ID	Type	Species	Position	Std	(+)Sequence	Std	(-)Sequence
Site Sequence Stack
ENSG00000120910_PTRO	Orthologue	Pan troglodytes	chr7:23,289,279-23,289,293	+	AGTTTCAATATTTCA	–	TGAAATATTGAAACT
ENSG00000120910_MMUL	Orthologue	Macaca mulatta	chr8:22,387,418-22,387,432	+	AGTTTCAATATTTTA	–	TAAAATATTGAAACT
ENSG00000120910_MMUS	Orthologue	Mus musculus	chr14:69,025,828-69,025,842	–	AGTTTCAATATTTCA	+	TGAAATATTGAAACT
ENSG00000120910_RNOR	Orthologue	Rattus norvegicus	chr15:50,690,108-50,690,122	–	AGTTTCAATATTTCA	+	TGAAATATTGAAACT
ENSG00000120910	Target	Homo sapiens	chr8:22,353,513-22,353,527	+	AGTTTCAATATTTCA	–	TGAAATATTGAAACT

Export Site Sequences Stack