cisRED: cis-regulatory element database

cisRED > Human 9 > gene. ENSG00000187821 > craHsap187372

Motif craHsap187372

More information about this gene at Ensembl.org

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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation

Motif overview
Atomic motif id	craHsap187372
Discovery p-value	3.85E-03
Motif location	chr4: 186,176,502-186,176,513 (+) (12 bp)
Search region location	chr4: 186,175,544-186,177,276 (+) (1,733 bp)
Assembly	Human, Ensembl v40 (NCBI 36)
Found in	24 species: Pan troglodytes, Pongo pygmaeus, Macaca mulatta, Loxodonta africana, Sus scrofa, Pteropus vampyrus, Myotis lucifugus, Otolemur garnettii, Canis familiaris, Equus caballus, Tupaia belangeri, Dasypus novemcinctus, Felis catus, Choloepus hoffmanni, Sorex araneus, Oryctolagus cuniculus, Erinaceus europaeus, Cavia porcellus, Mus musculus, Rattus norvegicus, Spermophilus tridecemlineatus, Macropus eugenii, Homo sapiens, Monodelphis domestica
Found with	Consensus.omops, Consensus.oops, Consensus.zmops, MEME.tcm
'De Novo' motif group ID	This motif was not submitted for clustering.
Similar to (annotation p-value)	There are 4 annotation(s) with p-values below 0.001. JASPAR: (1 annot.): Bsap(3.19E-04) TRANSFAC: (3 annot.): Pax-5(3.56E-04) , AhR(4.62E-04) , DEAF-1(6.87E-04) ORegAnno: (0 annot.): none
Modules (Co-occurring motif patterns)	Annotation-based: 50 (E4BP4__Pax-5) 234 (AR__Pax-5) 278 (AP-2__AhR) 437 (AhR__ZF5) 1234 (AhR__USF) 1256 (Pax-5__ZF5) 1367 (AhR__Stra13) 1516 (AhR__XBP-1) 2169 (AR__AhR) 2274 (AhR__HTF) 2470 (HTF__Pax-5) 2608 (AP-2__Pax-5) 2790 (AhR__HTF__HTF) 2793 (AhR__Stra13__XBP-1) 2834 (AhR__HTF__Stra13) 2885 (AhR__HTF__XBP-1) 2937 (AhR__Stra13__Stra13) 2939 (AhR__HTF__USF) 2945 (AhR__USF__XBP-1) 3056 (AhR__Stra13__USF) No 'de novo' modules exist in this database.

Sequence Conservation

Sequence logo

(+)motif

(-)motif

Consensus sequence

GCTTTAAAACGC

GCGTTTTAAAGC

Position frequency matrix

	1	2	3	4	5	6	7	8	9	10	11	12
A	0	0	0	0	0	24	16	24	24	8	0	0
C	1	23	5	0	0	0	0	0	0	16	0	24
G	23	0	0	0	0	0	0	0	0	0	24	0
T	0	1	19	24	24	0	8	0	0	0	0	0
	G	C	T	T	T	A	A	A	A	C	G	C

Transfac

Jaspar

CSV

	1	2	3	4	5	6	7	8	9	10	11	12
A	0	0	0	0	0	8	0	24	24	19	1	0
C	0	24	0	0	0	0	0	0	0	0	0	23
G	24	0	16	0	0	0	0	0	0	5	23	1
T	0	0	8	24	24	16	24	0	0	0	0	0
	G	C	G	T	T	T	T	A	A	A	G	C

Transfac

Jaspar

CSV

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Ensembl gene ID	Type	Species	Position	Std	(+)Sequence	Std	(-)Sequence
Site Sequence Stack
ENSG00000187821_PTRO	Orthologue	Pan troglodytes	chr3:204,523,360-204,523,371	+	GCTTTAAAACGC	–	GCGTTTTAAAGC
ENSG00000187821_PPYG	Orthologue	Pongo pygmaeus	ENSG00000187821_PPYG:965-976	+	GCTTTAAAACGC	–	GCGTTTTAAAGC
ENSG00000187821_MMUL	Orthologue	Macaca mulatta	chr5:177,116,121-177,116,132	+	GCTTTAAAACGC	–	GCGTTTTAAAGC
ENSG00000187821_LAFR	Orthologue	Loxodonta africana	scaffold_99791:9,384-9,395	–	GCTTTAAAACGC	+	GCGTTTTAAAGC
ENSG00000187821_SSCR	Orthologue	Sus scrofa	ENSG00000187821_SSCR:961-972	+	GCTTTAAAACGC	–	GCGTTTTAAAGC
ENSG00000187821_PVAM	Orthologue	Pteropus vampyrus	ENSG00000187821_PVAM:989-1,000	+	GCTTTAAAACGC	–	GCGTTTTAAAGC
ENSG00000187821_MLUC	Orthologue	Myotis lucifugus	ENSG00000187821_MLUC:898-909	–	GTCTTATAAAGC	+	GCTTTATAAGAC
ENSG00000187821_OGAR	Orthologue	Otolemur garnettii	ENSG00000187821_OGAR:1,407-1,418	–	GCCTTATAAAGC	+	GCTTTATAAGGC
ENSG00000187821_CFAM	Orthologue	Canis familiaris	chr16:48,527,769-48,527,780	–	GCTTTAAAACGC	+	GCGTTTTAAAGC
ENSG00000187821_ECAB	Orthologue	Equus caballus	ENSG00000187821_ECAB:565-576	+	GCTTTAAAACGC	–	GCGTTTTAAAGC
ENSG00000187821_TBEL	Orthologue	Tupaia belangeri	ENSG00000187821_TBEL:1,427-1,438	–	GCCTTATAAAGC	+	GCTTTATAAGGC
ENSG00000187821_DNOV	Orthologue	Dasypus novemcinctus	scaffold_69637:9,539-9,550	+	GCTTTAAAACGC	–	GCGTTTTAAAGC
ENSG00000187821_FCAT	Orthologue	Felis catus	ENSG00000187821_FCAT:973-984	+	GCTTTAAAACGC	–	GCGTTTTAAAGC
ENSG00000187821_CHOF	Orthologue	Choloepus hoffmanni	ENSG00000187821_CHOF:898-909	–	GCCTTATAAAGC	+	GCTTTATAAGGC
ENSG00000187821_SARA	Orthologue	Sorex araneus	ENSG00000187821_SARA:971-982	+	GCTTTAAAACGC	–	GCGTTTTAAAGC
ENSG00000187821_OCUN	Orthologue	Oryctolagus cuniculus	scaffold_174710:59,088-59,099	+	GCTTTAAAACGC	–	GCGTTTTAAAGC
ENSG00000187821_EEUR	Orthologue	Erinaceus europaeus	ENSG00000187821_EEUR:1,417-1,428	–	GCCTTATAAAGC	+	GCTTTATAAGGC
ENSG00000187821_CPOR	Orthologue	Cavia porcellus	ENSG00000187821_CPOR:963-974	+	GCTTTAAAACGC	–	GCGTTTTAAAGC
ENSG00000187821_MMUS	Orthologue	Mus musculus	chr8:47,793,435-47,793,446	–	GCTTTAAAACGC	+	GCGTTTTAAAGC
ENSG00000187821_RNOR	Orthologue	Rattus norvegicus	chr16:49,271,172-49,271,183	–	CCTTTATAAAGC	+	GCTTTATAAAGG
ENSG00000187821_STRI	Orthologue	Spermophilus tridecemlineatus	ENSG00000187821_STRI:600-611	+	GCTTTAAAACGC	–	GCGTTTTAAAGC
ENSG00000187821_MEUG	Orthologue	Macropus eugenii	ENSG00000187821_MEUG:1,385-1,396	+	GCTTTATAAAGC	–	GCTTTATAAAGC
ENSG00000187821	Target	Homo sapiens	chr4:186,176,502-186,176,513	+	GCTTTAAAACGC	–	GCGTTTTAAAGC
ENSG00000187821_MDOM	Orthologue	Monodelphis domestica	chr5:80,232,862-80,232,873	–	GCTTTATAAAGC	+	GCTTTATAAAGC

Export Site Sequences Stack