cisRED: cis-regulatory element database

cisRED > Human 9 > gene. ENSG00000198026 > craHsap205923

Motif craHsap205923

More information about this gene at Ensembl.org

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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation

Motif overview
Atomic motif id	craHsap205923
Discovery p-value	3.33E-03
Motif location	chr20: 44,034,458-44,034,467 (-) (10 bp)
Search region location	chr20: 44,034,041-44,036,875 (-) (2,835 bp)
Assembly	Human, Ensembl v40 (NCBI 36)
Found in	18 species: Pan troglodytes, Pongo pygmaeus, Macaca mulatta, Procavia capensis, Tursiops truncatus, Echinops telfairi, Bos taurus, Canis familiaris, Tupaia belangeri, Felis catus, Choloepus hoffmanni, Oryctolagus cuniculus, Erinaceus europaeus, Mus musculus, Rattus norvegicus, Spermophilus tridecemlineatus, Homo sapiens, Monodelphis domestica
Found with	MEME.zoops, MotifSampler
'De Novo' motif group ID	This motif was not submitted for clustering.
Similar to (annotation p-value)	There are 12 annotation(s) with p-values below 0.001. JASPAR: (0 annot.): none TRANSFAC: (12 annot.): ATF6(2.85E-05) , CREB(3.26E-05) , ATF(4.20E-05) , ATF4(5.49E-05) , E4F1(6.23E-05) ... ORegAnno: (0 annot.): none
Modules (Co-occurring motif patterns)	Annotation-based: 50 (E4BP4__Pax-5) 138 (CREB__Cdc5) 513 (E4F1__Pax-5) 519 (120-kDa_CRE-binding_protein__Cdc5) 544 (CREB__Pax-5) 810 (ATF6__Pax-5) 820 (ATF3__Cdc5) 877 (Cdc5__XBP-1) 1155 (120-kDa_CRE-binding_protein__Pax-5) 1611 (ATF__Cdc5) 1704 (ATF4__Cdc5) 1854 (ATF4__Pax-5) 1880 (ATF__Pax-5) 1975 (Cdc5__E4BP4) No 'de novo' modules exist in this database.

Sequence Conservation

Sequence logo

(+)motif

(-)motif

Consensus sequence

GTGACGTCAy

rTGACGTCAC

Position frequency matrix

	1	2	3	4	5	6	7	8	9	10
A	2	0	0	18	0	0	0	1	17	2
C	0	0	0	0	18	0	0	16	0	10
G	16	0	18	0	0	18	0	0	0	0
T	0	18	0	0	0	0	18	1	1	6
	G	T	G	A	C	G	T	C	A	y

Transfac

Jaspar

CSV

	1	2	3	4	5	6	7	8	9	10
A	6	1	1	18	0	0	0	0	18	0
C	0	0	0	0	18	0	0	18	0	16
G	10	0	16	0	0	18	0	0	0	0
T	2	17	1	0	0	0	18	0	0	2
	r	T	G	A	C	G	T	C	A	C

Transfac

Jaspar

CSV

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Ensembl gene ID	Type	Species	Position	Std	(+)Sequence	Std	(-)Sequence
Site Sequence Stack
ENSG00000198026_PTRO	Orthologue	Pan troglodytes	chr21:46,560,215-46,560,224	+	GTGACGTCAT	–	ATGACGTCAC
ENSG00000198026_PPYG	Orthologue	Pongo pygmaeus	ENSG00000198026_PPYG:2,424-2,433	–	GTGACGTCAT	+	ATGACGTCAC
ENSG00000198026_MMUL	Orthologue	Macaca mulatta	chr10:18,518,646-18,518,655	–	GTGACGTCAT	+	ATGACGTCAC
ENSG00000198026_PCAP	Orthologue	Procavia capensis	ENSG00000198026_PCAP:276-285	+	ATGACGTTAT	–	ATAACGTCAT
ENSG00000198026_TTRU	Orthologue	Tursiops truncatus	ENSG00000198026_TTRU:296-305	+	GTGACGTCAC	–	GTGACGTCAC
ENSG00000198026_ETEL	Orthologue	Echinops telfairi	scaffold_324580:127,445-127,454	+	GTGACGTCAA	–	TTGACGTCAC
ENSG00000198026_BTAU	Orthologue	Bos taurus	chr13:54,751,593-54,751,602	–	GTGACGTCAC	+	GTGACGTCAC
ENSG00000198026_CFAM	Orthologue	Canis familiaris	chr24:36,223,065-36,223,074	+	GTGACGTCAA	–	TTGACGTCAC
ENSG00000198026_TBEL	Orthologue	Tupaia belangeri	ENSG00000198026_TBEL:2,090-2,099	–	GTGACGTAAC	+	GTTACGTCAC
ENSG00000198026_FCAT	Orthologue	Felis catus	ENSG00000198026_FCAT:79-88	+	ATGACGTCTC	–	GAGACGTCAT
ENSG00000198026_CHOF	Orthologue	Choloepus hoffmanni	ENSG00000198026_CHOF:2,426-2,435	+	GTGACGTCAC	–	GTGACGTCAC
ENSG00000198026_OCUN	Orthologue	Oryctolagus cuniculus	scaffold_83230:10,594-10,603	–	GTGACGTCAC	+	GTGACGTCAC
ENSG00000198026_EEUR	Orthologue	Erinaceus europaeus	ENSG00000198026_EEUR:97-106	–	GTGACGTCAC	+	GTGACGTCAC
ENSG00000198026_MMUS	Orthologue	Mus musculus	chr2:164,603,013-164,603,022	–	GTGACGTCAT	+	ATGACGTCAC
ENSG00000198026_RNOR	Orthologue	Rattus norvegicus	chr3:155,947,819-155,947,828	+	GTGACGTCAC	–	GTGACGTCAC
ENSG00000198026_STRI	Orthologue	Spermophilus tridecemlineatus	ENSG00000198026_STRI:248-257	–	GTGACGTCAC	+	GTGACGTCAC
ENSG00000198026	Target	Homo sapiens	chr20:44,034,458-44,034,467	+	GTGACGTCAT	–	ATGACGTCAC
ENSG00000198026_MDOM	Orthologue	Monodelphis domestica	chr1:449,568,007-449,568,016	+	GTGACGTCAC	–	GTGACGTCAC

Export Site Sequences Stack