FILTERS:
pvalue:0.1
Motif craHsap212247
More information about this gene at Ensembl.org Go to UCSC
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Currently, this page only shows information about a motif if it:
+ has a discovery p-value < 0.1
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craHsap212247
Discovery p-value 3.20E-02
Motif location chrX: 101,791,580-101,791,593 (+) (14 bp)
Search region location chrX: 101,791,473-101,793,172 (+) (1,700 bp)
Assembly Human, Ensembl v40 (NCBI 36)
Found in 6 species: Pan troglodytes, Pongo pygmaeus, Nomascus leucogenys, Macaca mulatta, Canis familiaris, Homo sapiens
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 3 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (3 annot.): LEF-1(1.56E-05) ,    LEF-1(6.66E-05) ,    TCF-4(2.38E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 No annotation-based modules contain this motif.
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence CATCTTCAAAGCCA TGGCTTTGAAGATG
Position frequency matrix
1 2 3 4 5 6 7 8 9 10 11 12 13 14
A 0 6 0 0 0 0 0 6 6 6 0 0 0 6
C 6 0 0 6 0 0 6 0 0 0 0 6 6 0
G 0 0 0 0 0 0 0 0 0 0 6 0 0 0
T 0 0 6 0 6 6 0 0 0 0 0 0 0 0
C A T C T T C A A A G C C A
1 2 3 4 5 6 7 8 9 10 11 12 13 14
A 0 0 0 0 0 0 0 0 6 6 0 6 0 0
C 0 0 0 6 0 0 0 0 0 0 0 0 0 0
G 0 6 6 0 0 0 0 6 0 0 6 0 0 6
T 6 0 0 0 6 6 6 0 0 0 0 0 6 0
T G G C T T T G A A G A T G

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSG00000198932_PTRO Orthologue Pan troglodytes chrX:105,250,467-105,250,480 + CATCTTCAAAGCCA – TGGCTTTGAAGATG
ENSG00000198932_PPYG Orthologue Pongo pygmaeus ENSG00000198932_PPYG:108-121 + CATCTTCAAAGCCA – TGGCTTTGAAGATG
ENSG00000198932_NLEU Orthologue Nomascus leucogenys ENSG00000198932_NLEU:108-121 + CATCTTCAAAGCCA – TGGCTTTGAAGATG
ENSG00000198932_MMUL Orthologue Macaca mulatta chrX:101,266,366-101,266,379 + CATCTTCAAAGCCA – TGGCTTTGAAGATG
ENSG00000198932_CFAM Orthologue Canis familiaris chrX:79,378,408-79,378,421 + CATCTTCAAAGCCA – TGGCTTTGAAGATG
ENSG00000198932 Target Homo sapiens chrX:101,791,580-101,791,593 + CATCTTCAAAGCCA – TGGCTTTGAAGATG

Questions or comments: cisred@bcgsc.ca