FILTERS:
pvalue:0.1
Motif craHsap23284
More information about this gene at Ensembl.org Go to UCSC
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Currently, this page only shows information about a motif if it:
+ has a discovery p-value < 0.1
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craHsap23284
Discovery p-value 4.62E-05
Motif location chrX: 100,549,704-100,549,709 (+) (6 bp)
Search region location chrX: 100,547,574-100,550,046 (+) (2,473 bp)
Assembly Human, Ensembl v40 (NCBI 36)
Found in 23 species: Pan troglodytes, Macaca mulatta, Procavia capensis, Loxodonta africana, Sus scrofa, Tursiops truncatus, Echinops telfairi, Pteropus vampyrus, Myotis lucifugus, Canis familiaris, Equus caballus, Tupaia belangeri, Dasypus novemcinctus, Felis catus, Choloepus hoffmanni, Sorex araneus, Ochotona princeps, Oryctolagus cuniculus, Erinaceus europaeus, Mus musculus, Rattus norvegicus, Spermophilus tridecemlineatus, Homo sapiens
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 14 annotation(s) with p-values below 0.001.
JASPAR: (4 annot.): E4BP4(6.70E-04) ,    HLF(7.77E-04) ,    Myc-Max(8.58E-04) ,    CREB(9.10E-04)
TRANSFAC: (10 annot.): E4F1(1.45E-04) ,    HIF-1(1.51E-04) ,    HIF-1(1.58E-04) ,    E4BP4(2.56E-04) ,    HTF(2.87E-04) ...
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
50 (E4BP4__Pax-5)     58 (ALF1A__XBP-1)     146 (HTF__Nrf2)     165 (ATF__E4BP4)     185 (E4F1__HIF-1)     243 (CUTL1__HTF)     271 (CREB__HIF-1)     311 (CREB__XBP-1)     376 (COMP1__E4F1)     513 (E4F1__Pax-5)     534 (XBP-1__XBP-1)     578 (HTF__MITF)     639 (E4BP4__XBP-1)     738 (BHLHB2__E4F1)     913 (120-kDa_CRE-binding_protein__HTF)     918 (HIF-1__USF)     947 (ATF__HTF)     955 (E4BP4__PPAR-alpha)     965 (120-kDa_CRE-binding_protein__XBP-1)     970 (120-kDa_CRE-binding_protein__E4F1)     985 (CREB__E4BP4)     996 (HTF__HTF)     1036 (E2F-1__HTF)     1038 (HTF__Stra13)     1051 (BHLHB2__XBP-1)     1117 (AhR__E4F1)     1139 (CREB__HTF)     1148 (ATF__E4F1)     1152 (ALF1A__HIF-1)     1185 (BHLHB2__HTF)     1202 (E4F1__Stra13)     1242 (HIF-1__Pax-5)     1248 (HTF__SREBP-1)     1291 (HTF__USF)     1298 (Stra13__XBP-1)     1310 (BHLHB2__HIF-1)     1398 (HIF-1__XBP-1)     1409 (120-kDa_CRE-binding_protein__HIF-1)     1440 (COMP1__E4BP4)     1449 (AP-2alphaA__E4F1)     1489 (ATF6__E4F1)     1493 (HIF-1__HIF-1)     1516 (AhR__XBP-1)     1575 (AP-2alphaA__HIF-1)     1580 (ALF1A__HTF)     1641 (E4BP4__Stra13)     1675 (HIF-1__Stra13)     1695 (ATF6__HTF)     1699 (COMP1__HTF)     1728 (E4BP4__E4F1)     1808 (E2F-1__E4F1)     1848 (E4F1__MITF)     1874 (HIF-1__MITF)     1878 (E4BP4__HTF)     1897 (MITF__XBP-1)     1928 (ATF__XBP-1)     1965 (ATF6__XBP-1)     2068 (E4F1__XBP-1)     2071 (CREB__E4F1)     2083 (E2F-1__HIF-1)     2102 (AhR__HIF-1)     2120 (USF__XBP-1)     2155 (Nrf2__XBP-1)     2199 (ATF__HIF-1)     2204 (E4F1__USF)     2274 (AhR__HTF)     2280 (E4BP4__HIF-1)     2300 (E4F1__E4F1)     2341 (HTF__PPAR-alpha)     2403 (120-kDa_CRE-binding_protein__E4BP4)     2415 (E2F-1__XBP-1)     2437 (HTF__XBP-1)     2448 (CUTL1__E4F1)     2470 (HTF__Pax-5)     2536 (E4BP4__MITF)     2647 (E4F1__HTF)     2687 (HIF-1__HTF)     2688 (CUTL1__E4BP4)     2699 (AP-2alphaA__XBP-1)     2720 (ALF1A__E4F1)     2761 (E4F1__E4F1__HTF)     2764 (HIF-1__HIF-1__Stra13)     2766 (CREB__HTF__XBP-1)     2774 (CREB__HTF__USF)     2783 (CREB__E4F1__E4F1)     2784 (CREB__E4F1__HIF-1)     2790 (AhR__HTF__HTF)     2791 (E4F1__USF__XBP-1)     2793 (AhR__Stra13__XBP-1)     2796 (HTF__Stra13__Stra13)     2799 (AhR__E2F-1__HIF-1)     2807 (CREB__CREB__HTF)     2812 (E4F1__E4F1__Stra13)     2816 (CREB__HTF__HTF)     2818 (AhR__HIF-1__HIF-1)     2824 (E4F1__Stra13__XBP-1)     2830 (AhR__E4F1__HTF)     2834 (AhR__HTF__Stra13)     2837 (AhR__E4F1__E4F1)     2838 (E4F1__HTF__HTF)     2843 (ATF__CREB__HTF)     2847 (CREB__CREB__E4F1)     2861 (ALF1A__Stra13__XBP-1)     2863 (HIF-1__Stra13__USF)     2864 (AhR__E4F1__Stra13)     2865 (E4F1__E4F1__XBP-1)     2869 (CREB__HTF__Stra13)     2884 (HTF__Stra13__USF)     2885 (AhR__HTF__XBP-1)     2886 (HTF__HTF__Stra13)     2889 (HIF-1__HIF-1__HTF)     2890 (ATF__CREB__XBP-1)     2892 (CREB__CREB__XBP-1)     2894 (AhR__CREB__XBP-1)     2898 (E4F1__HIF-1__HTF)     2917 (HTF__HTF__USF)     2923 (E4F1__HIF-1__USF)     2936 (HIF-1__HTF__USF)     2939 (AhR__HTF__USF)     2940 (ALF1A__E4F1__HTF)     2942 (CREB__CREB__HIF-1)     2945 (AhR__USF__XBP-1)     2955 (AhR__HIF-1__HTF)     2958 (HIF-1__Stra13__XBP-1)     2963 (ALF1A__E4F1__Stra13)     2964 (HTF__USF__XBP-1)     2965 (E4F1__Stra13__Stra13)     2967 (HIF-1__HTF__XBP-1)     2970 (HTF__XBP-1__XBP-1)     2975 (HIF-1__HIF-1__XBP-1)     2977 (AhR__HIF-1__XBP-1)     2981 (E4F1__HIF-1__HIF-1)     2984 (AhR__HIF-1__Pax-5)     2986 (ALF1A__HTF__Stra13)     2990 (CREB__HIF-1__HTF)     3000 (Stra13__Stra13__XBP-1)     3004 (CREB__XBP-1__XBP-1)     3012 (HTF__Stra13__XBP-1)     3014 (HIF-1__HTF__Stra13)     3018 (HIF-1__Stra13__Stra13)     3023 (E4F1__HTF__XBP-1)     3025 (E4F1__HTF__Stra13)     3028 (CREB__HIF-1__XBP-1)     3029 (E4F1__HIF-1__Stra13)     3035 (ATF__CREB__HIF-1)     3046 (CREB__Stra13__XBP-1)     3047 (HIF-1__HTF__HTF)     3051 (HIF-1__HIF-1__USF)     3052 (CREB__HIF-1__Stra13)     3053 (CREB__E4F1__HTF)     3061 (AhR__E4F1__USF)     3063 (120-kDa_CRE-binding_protein__CREB__XBP-1)     3065 (Stra13__USF__XBP-1)     3068 (CREB__E4F1__XBP-1)     3070 (E4F1__Stra13__USF)     3077 (ATF__CREB__E4F1)     3078 (CREB__HIF-1__Pax-5)     3082 (AhR__E4F1__XBP-1)     3085 (E4F1__HIF-1__XBP-1)     3086 (E4F1__HTF__USF)     3091 (HIF-1__USF__XBP-1)     3092 (HTF__USF__USF)    

No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TCACGT ACGTGA
Position frequency matrix
1 2 3 4 5 6
A 0 0 23 0 0 0
C 0 23 0 23 0 0
G 0 0 0 0 23 0
T 23 0 0 0 0 23
T C A C G T
1 2 3 4 5 6
A 23 0 0 0 0 23
C 0 23 0 0 0 0
G 0 0 23 0 23 0
T 0 0 0 23 0 0
A C G T G A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSG00000126945_PTRO Orthologue Pan troglodytes chrX:103,724,318-103,724,323 + TCACGT – ACGTGA
ENSG00000126945_MMUL Orthologue Macaca mulatta chrX:100,125,831-100,125,836 + TCACGT – ACGTGA
ENSG00000126945_PCAP Orthologue Procavia capensis ENSG00000126945_PCAP:750-755 + TCACGT – ACGTGA
ENSG00000126945_LAFR Orthologue Loxodonta africana scaffold_45393:38,295-38,300 – TCACGT + ACGTGA
ENSG00000126945_SSCR Orthologue Sus scrofa ENSG00000126945_SSCR:225-230 + TCACGT – ACGTGA
ENSG00000126945_TTRU Orthologue Tursiops truncatus ENSG00000126945_TTRU:207-212 + TCACGT – ACGTGA
ENSG00000126945_ETEL Orthologue Echinops telfairi scaffold_320130:59,928-59,933 + TCACGT – ACGTGA
ENSG00000126945_PVAM Orthologue Pteropus vampyrus ENSG00000126945_PVAM:1,950-1,955 + TCACGT – ACGTGA
ENSG00000126945_MLUC Orthologue Myotis lucifugus ENSG00000126945_MLUC:1,869-1,874 + TCACGT – ACGTGA
ENSG00000126945_CFAM Orthologue Canis familiaris chrX:78,386,529-78,386,534 + TCACGT – ACGTGA
ENSG00000126945_ECAB Orthologue Equus caballus ENSG00000126945_ECAB:2,017-2,022 + TCACGT – ACGTGA
ENSG00000126945_TBEL Orthologue Tupaia belangeri ENSG00000126945_TBEL:502-507 + TCACGT – ACGTGA
ENSG00000126945_DNOV Orthologue Dasypus novemcinctus scaffold_14709:9,934-9,939 – TCACGT + ACGTGA
ENSG00000126945_FCAT Orthologue Felis catus ENSG00000126945_FCAT:423-428 + TCACGT – ACGTGA
ENSG00000126945_CHOF Orthologue Choloepus hoffmanni ENSG00000126945_CHOF:1,096-1,101 + TCACGT – ACGTGA
ENSG00000126945_SARA Orthologue Sorex araneus ENSG00000126945_SARA:518-523 + TCACGT – ACGTGA
ENSG00000126945_OPRI Orthologue Ochotona princeps ENSG00000126945_OPRI:536-541 + TCACGT – ACGTGA
ENSG00000126945_OCUN Orthologue Oryctolagus cuniculus scaffold_173277:25,136-25,141 + TCACGT – ACGTGA
ENSG00000126945_EEUR Orthologue Erinaceus europaeus ENSG00000126945_EEUR:566-571 + TCACGT – ACGTGA
ENSG00000126945_MMUS Orthologue Mus musculus chrX:129,947,543-129,947,548 + TCACGT – ACGTGA
ENSG00000126945_RNOR Orthologue Rattus norvegicus chrX:122,056,451-122,056,456 + TCACGT – ACGTGA
ENSG00000126945_STRI Orthologue Spermophilus tridecemlineatus ENSG00000126945_STRI:1,505-1,510 + TCACGT – ACGTGA
ENSG00000126945 Target Homo sapiens chrX:100,549,704-100,549,709 + TCACGT – ACGTGA

Questions or comments: cisred@bcgsc.ca