cisRED: cis-regulatory element database

cisRED > Human 9 > gene. ENSG00000143774 > craHsap33512

Motif craHsap33512

More information about this gene at Ensembl.org

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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation

Motif overview
Atomic motif id	craHsap33512
Discovery p-value	2.48E-02
Motif location	chr1: 226,392,355-226,392,360 (+) (6 bp)
Search region location	chr1: 226,391,600-226,394,804 (+) (3,205 bp)
Assembly	Human, Ensembl v40 (NCBI 36)
Found in	5 species: Pan troglodytes, Macaca mulatta, Mus musculus, Rattus norvegicus, Homo sapiens
Found with	Consensus.zmops
'De Novo' motif group ID	This motif was not submitted for clustering.
Similar to (annotation p-value)	There are 5 annotation(s) with p-values below 0.001. JASPAR: (0 annot.): none TRANSFAC: (5 annot.): Cdc5(9.07E-05) , POU2F1(1.90E-04) , Pax-6(6.36E-04) , Nkx6-2(9.62E-04) , Pax-1(9.75E-04) ORegAnno: (0 annot.): none
Modules (Co-occurring motif patterns)	No annotation-based modules contain this motif. No 'de novo' modules exist in this database.

Sequence Conservation

Sequence logo

(+)motif

(-)motif

Consensus sequence

TTAAAT

ATTTAA

Position frequency matrix

	1	2	3	4	5	6
A	0	0	5	5	5	0
C	0	0	0	0	0	0
G	0	0	0	0	0	0
T	5	5	0	0	0	5
	T	T	A	A	A	T

Transfac

Jaspar

CSV

	1	2	3	4	5	6
A	5	0	0	0	5	5
C	0	0	0	0	0	0
G	0	0	0	0	0	0
T	0	5	5	5	0	0
	A	T	T	T	A	A

Transfac

Jaspar

CSV

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Ensembl gene ID	Type	Species	Position	Std	(+)Sequence	Std	(-)Sequence
Site Sequence Stack
ENSG00000143774_PTRO	Orthologue	Pan troglodytes	chr1:208,419,667-208,419,672	+	TTAAAT	–	ATTTAA
ENSG00000143774_MMUL	Orthologue	Macaca mulatta	chr1:142,243,991-142,243,996	–	TTAAAT	+	ATTTAA
ENSG00000143774_MMUS	Orthologue	Mus musculus	chr11:59,008,842-59,008,847	+	TTAAAT	–	ATTTAA
ENSG00000143774_RNOR	Orthologue	Rattus norvegicus	chr10:45,497,830-45,497,835	+	TTAAAT	–	ATTTAA
ENSG00000143774	Target	Homo sapiens	chr1:226,392,355-226,392,360	+	TTAAAT	–	ATTTAA

Export Site Sequences Stack