FILTERS:
pvalue:0.1
Motif craHsap44422
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craHsap44422
Discovery p-value 8.39E-05
Motif location chr10: 63,330,792-63,330,797 (+) (6 bp)
Search region location chr10: 63,329,454-63,331,264 (+) (1,811 bp)
Assembly Human, Ensembl v40 (NCBI 36)
Found in 28 species: Pan troglodytes, Macaca mulatta, Procavia capensis, Loxodonta africana, Sus scrofa, Tursiops truncatus, Echinops telfairi, Pteropus vampyrus, Myotis lucifugus, Otolemur garnettii, Canis familiaris, Equus caballus, Tupaia belangeri, Dasypus novemcinctus, Felis catus, Choloepus hoffmanni, Sorex araneus, Oryctolagus cuniculus, Erinaceus europaeus, Danio rerio, Cavia porcellus, Mus musculus, Rattus norvegicus, Spermophilus tridecemlineatus, Xenopus tropicalis, Macropus eugenii, Ornithorhynchus anatinus, Homo sapiens
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 11 annotation(s) with p-values below 0.001.
JASPAR: (1 annot.): E4BP4(1.93E-04)
TRANSFAC: (10 annot.): TEF(4.26E-05) ,    E4BP4(1.50E-04) ,    FOXP1a(2.41E-04) ,    POU1F1(2.45E-04) ,    Cdx-2(2.63E-04) ...
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
19 (COMP1__HNF-1alpha)     34 (FOXP1a__HNF-3)     50 (E4BP4__Pax-5)     116 (Cdx-2__HNF-1alpha)     132 (FOXP1a__HNF-1alpha)     182 (HNF-1alpha__TEF)     245 (COMP1__POU3F2)     249 (E4BP4__Pbx1a)     266 (POU1F1__POU3F2)     276 (FOXP1a__POU6F1_(c2))     439 (Cdx-2__HNF-3)     441 (COMP1__Chx10)     448 (Cdx-2__Chx10)     463 (Chx10__E4BP4)     464 (POU1F1__Pbx1a)     498 (FOXP1a__POU3F2)     592 (Cdx-2__POU3F2)     675 (E4BP4__POU2F1)     677 (FOXP1a__Pax-6)     717 (POU1F1__STAT5A)     766 (COMP1__POU2F1)     798 (Cdx-2__Pbx1a)     835 (E4BP4__POU3F2)     887 (COMP1__HNF-3)     902 (POU1F1__POU2F1)     942 (POU6F1_(c2)__TEF)     978 (E4BP4__POU6F1_(c2))     983 (COMP1__COMP1)     1022 (COMP1__POU1F1)     1030 (Chx10__POU1F1)     1052 (Pbx1a__TEF)     1374 (POU2F1__TEF)     1440 (COMP1__E4BP4)     1578 (Cdx-2__POU2F1)     1633 (E4BP4__STAT5A)     1699 (COMP1__HTF)     1719 (Chx10__TEF)     1733 (HNF-3__POU1F1)     1840 (Chx10__FOXP1a)     1850 (POU1F1__POU6F1_(c2))     1876 (POU1F1__Pax-6)     1878 (E4BP4__HTF)     1941 (COMP1__Cdx-2)     1979 (FOXP1a__Pbx1a)     2011 (POU3F2__TEF)     2016 (COMP1__Pbx1a)     2074 (COMP1__FOXP1a)     2106 (COMP1__POU6F1_(c2))     2219 (FOXP1a__POU2F1)     2339 (E4BP4__HNF-3)     2340 (COMP1__Pax-6)     2407 (Cdx-2__POU6F1_(c2))     2636 (COMP1__TEF)     2693 (HNF-3__TEF)     2736 (STAT5A__TEF)     2750 (HNF-1alpha__POU1F1)     2866 (POU1F1__POU2F1__POU3F2)     2868 (HNF-1alpha__POU1F1__POU3F2)     2880 (FOXP1a__POU2F1__POU3F2)     2896 (Chx10__FOXP1a__POU2F1)    

No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATATAA TTATAT
Position frequency matrix
1 2 3 4 5 6
A 28 0 28 0 28 28
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 0 28 0 28 0 0
A T A T A A
1 2 3 4 5 6
A 0 0 28 0 28 0
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 28 28 0 28 0 28
T T A T A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSG00000150347_PTRO Orthologue Pan troglodytes chr8:64,178,010-64,178,015 – ATATAA + TTATAT
ENSG00000150347_MMUL Orthologue Macaca mulatta chr9:75,373,154-75,373,159 + ATATAA – TTATAT
ENSG00000150347_PCAP Orthologue Procavia capensis ENSG00000150347_PCAP:1,562-1,567 – ATATAA + TTATAT
ENSG00000150347_LAFR Orthologue Loxodonta africana scaffold_1291:115,552-115,557 – ATATAA + TTATAT
ENSG00000150347_SSCR Orthologue Sus scrofa ENSG00000150347_SSCR:1,031-1,036 – ATATAA + TTATAT
ENSG00000150347_TTRU Orthologue Tursiops truncatus ENSG00000150347_TTRU:702-707 – ATATAA + TTATAT
ENSG00000150347_ETEL Orthologue Echinops telfairi scaffold_305315:955-960 – ATATAA + TTATAT
ENSG00000150347_PVAM Orthologue Pteropus vampyrus ENSG00000150347_PVAM:1,540-1,545 – ATATAA + TTATAT
ENSG00000150347_MLUC Orthologue Myotis lucifugus ENSG00000150347_MLUC:952-957 – ATATAA + TTATAT
ENSG00000150347_OGAR Orthologue Otolemur garnettii ENSG00000150347_OGAR:1,542-1,547 – ATATAA + TTATAT
ENSG00000150347_CFAM Orthologue Canis familiaris chr4:17,132,132-17,132,137 – ATATAA + TTATAT
ENSG00000150347_ECAB Orthologue Equus caballus ENSG00000150347_ECAB:1,042-1,047 – ATATAA + TTATAT
ENSG00000150347_TBEL Orthologue Tupaia belangeri ENSG00000150347_TBEL:996-1,001 – ATATAA + TTATAT
ENSG00000150347_DNOV Orthologue Dasypus novemcinctus scaffold_176:82,337-82,342 + ATATAA – TTATAT
ENSG00000150347_FCAT Orthologue Felis catus ENSG00000150347_FCAT:1,546-1,551 – ATATAA + TTATAT
ENSG00000150347_CHOF Orthologue Choloepus hoffmanni ENSG00000150347_CHOF:1,032-1,037 – ATATAA + TTATAT
ENSG00000150347_SARA Orthologue Sorex araneus ENSG00000150347_SARA:1,003-1,008 – ATATAA + TTATAT
ENSG00000150347_OCUN Orthologue Oryctolagus cuniculus scaffold_196303:77,104-77,109 – ATATAA + TTATAT
ENSG00000150347_EEUR Orthologue Erinaceus europaeus ENSG00000150347_EEUR:1,564-1,569 – ATATAA + TTATAT
ENSG00000150347_DRER Orthologue Danio rerio chr12:4,654,759-4,654,764 + ATATAA – TTATAT
ENSG00000150347_CPOR Orthologue Cavia porcellus ENSG00000150347_CPOR:847-852 – ATATAA + TTATAT
ENSG00000150347_MMUS Orthologue Mus musculus chr10:67,675,087-67,675,092 + ATATAA – TTATAT
ENSG00000150347_RNOR Orthologue Rattus norvegicus chr20:21,121,721-21,121,726 – ATATAA + TTATAT
ENSG00000150347_STRI Orthologue Spermophilus tridecemlineatus ENSG00000150347_STRI:11-16 – ATATAA + TTATAT
ENSG00000150347_XTRO Orthologue Xenopus tropicalis scaffold_506:392,815-392,820 – ATATAA + TTATAT
ENSG00000150347_MEUG Orthologue Macropus eugenii ENSG00000150347_MEUG:1,547-1,552 – ATATAA + TTATAT
ENSG00000150347_OANA Orthologue Ornithorhynchus anatinus ENSG00000150347_OANA:1,045-1,050 – ATATAA + TTATAT
ENSG00000150347 Target Homo sapiens chr10:63,330,792-63,330,797 + ATATAA – TTATAT

Questions or comments: cisred@bcgsc.ca