FILTERS:
pvalue:0.1
Filter Settings for Mouse 3.1

You can change the settings on this page to have all the Mouse 3.1 pages show only motifs that satisfy criteria like: You can customize your filter settings for each cisRED database independently.

Usage note: Filters and cookies
cisRED manages your 'Filter' settings via a browser 'cookie'. You must allow your web browser to accept cookies from cisred.org for your filter settings to take effect.

FILTERS
All atomic motifs in cisRED Mouse 3.1 have a p-value less than or equal to 0.1.
The radio buttons below allow you to limit the display of motifs to those with p-values smaller than the selected threshold.
0.1(default) 0.09 0.08 0.07 0.06 0.05 0.04 0.03 0.02 0.01 0.005
In cisRED, regulatory elements for a target genome are discovered based on an alignment of each target gene's orthologues.
By changing the settings below, you can limit the results that are displayed.
I want every motif shown to have been found in at least one of the species selected below.
I want every motif shown to have been found in all of the species selected below.
Bos taurus
     (cattle) 		Callithrix jacchus
     (domestic guinea pig) 		Canis familiaris
     (dog)
Cavia porcellus
     (guinea pig) 		Choloepus hoffmanni
     (Hoffmann's two-toed sloth ) 		Danio rerio
     (zebrafish)
Dasypus novemcinctus
     (nine-banded armadillo) 		Echinops telfairi
     (small Madagascar hedgehog) 		Equus caballus
     (horse)
Erinaceus europaeus
     (western European hedgehog) 		Felis catus
     (cat) 		Fugu rubripes
     (torafugu)
Gallus gallus
     (chicken) 		Homo sapiens
     (human) 		Loxodonta africana
     (African savanna elephant)
Macaca mulatta
     (rhesus monkey) 		Macropus eugenii
     (tammar wallaby) 		Microcebus murinus
     (gray mouse lemur)
Monodelphis domestica
     (gray short-tailed opossum) 		Mus musculus
     (house mouse) 		Myotis lucifugus
     (little brown bat)
Nomascus leucogenys
     (white-cheeked Gibbon ) 		Ornithorhynchus anatinus
     (platypus) 		Oryctolagus cuniculus
     (rabbit)
Otolemur garnettii
     (small-eared galago) 		Ovis aries
     (sheep) 		Pan troglodytes
     (chimpanzee)
Papio anubis
     (olive baboon) 		Papio cynocephalus
     (yellow baboon) 		Pongo pygmaeus
     (orangutan)
Procavia capensis
     (cape rock hyrax) 		Rattus norvegicus
     (Norway rat) 		Sorex araneus
     (European shrew)
Spermophilus tridecemlineatus
     (thirteen-lined ground squirrel) 		Sus scrofa
     (pig) 		Tetraodon nigroviridis
     (tetraodon)
Tupaia belangeri
     (northern tree shrew) 		Xenopus tropicalis
     (western clawed frog)
There are three different algorithms used to discover motifs in a search region: Consensus, MotifSampler, and MEME. Furthermore, each algorithm can be run with different parameter settings.
Below, you can limit the displayed result set to motifs discovered with specific motif algorithm(s) and parameter(s).
Consensus, One Occurrence Per Sequence (Consensus.oops)
Consensus, One or More Occurrence Per Sequence (Consensus.omops)
Consensus, Zero or More Occurrence Per Sequence (Consensus.zmops)
MEME, One Occurrence Per Sequence (MEME.oops)
MEME, Zero or One Occurrence Per Sequence (MEME.zoops)
MEME, Two-Component Mixture (MEME.tcm)
Motif Sampler

Questions or comments: cisred@bcgsc.ca