FILTERS:
pvalue:0.1
Motif craMmus128700
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus128700
Discovery p-value 2.79E-03
Motif location chr3: 85,065,169-85,065,176 (+) (8 bp)
Search region location chr3: 85,063,562-85,065,261 (+) (1,700 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 26 species: Mus musculus, Bos taurus, Canis familiaris, Choloepus hoffmanni, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Equus caballus, Erinaceus europaeus, Echinops telfairi, Felis catus, Fugu rubripes, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macropus eugenii, Myotis lucifugus, Macaca mulatta, Ornithorhynchus anatinus, Oryctolagus cuniculus, Otolemur garnettii, Procavia capensis, Pan troglodytes, Rattus norvegicus, Tupaia belangeri, Tetraodon nigroviridis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 2 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (2 annot.): CUTL1(3.33E-05) ,    CUTL1(8.66E-05)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence AATAATCT AGATTATT
Position frequency matrix
1 2 3 4 5 6 7 8
A 26 26 0 24 26 0 1 0
C 0 0 0 0 0 0 25 0
G 0 0 0 0 0 0 0 0
T 0 0 26 2 0 26 0 26
A A T A A T C T
1 2 3 4 5 6 7 8
A 26 0 26 0 2 26 0 0
C 0 0 0 0 0 0 0 0
G 0 25 0 0 0 0 0 0
T 0 1 0 26 24 0 26 26
A G A T T A T T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000028086 Target Mus musculus chr3:85,065,169-85,065,176 + AATAATCT – AGATTATT
ENSMUSG00000028086_BTAU Orthologue Bos taurus chr17:811,797-811,804 + AATAATCT – AGATTATT
ENSMUSG00000028086_CFAM Orthologue Canis familiaris chr15:53,235,982-53,235,989 – AATAATCT + AGATTATT
ENSMUSG00000028086_CHOF Orthologue Choloepus hoffmanni ENSMUSG00000028086_CHOF:1,241-1,248 + AATAATCT – AGATTATT
ENSMUSG00000028086_CJAC Orthologue Callithrix jacchus ENSMUSG00000028086_CJAC:698-705 + AATAATCT – AGATTATT
ENSMUSG00000028086_CPOR Orthologue Cavia porcellus ENSMUSG00000028086_CPOR:1,140-1,147 + AATAATCT – AGATTATT
ENSMUSG00000028086_DNOV Orthologue Dasypus novemcinctus scaffold_1163:81,155-81,162 + AATAATCT – AGATTATT
ENSMUSG00000028086_ECAB Orthologue Equus caballus ENSMUSG00000028086_ECAB:692-699 + AATAATCT – AGATTATT
ENSMUSG00000028086_EEUR Orthologue Erinaceus europaeus ENSMUSG00000028086_EEUR:1,378-1,385 + AATAATCT – AGATTATT
ENSMUSG00000028086_ETEL Orthologue Echinops telfairi scaffold_295913:40,670-40,677 + AATAATCT – AGATTATT
ENSMUSG00000028086_FCAT Orthologue Felis catus ENSMUSG00000028086_FCAT:1,337-1,344 + AATAATCT – AGATTATT
ENSMUSG00000028086_FRUB Orthologue Fugu rubripes chrUn:45,306,587-45,306,594 + AATTATAT – ATATAATT
ENSMUSG00000028086_HSAP Orthologue Homo sapiens chr4:153,631,544-153,631,551 – AATAATCT + AGATTATT
ENSMUSG00000028086_LAFR Orthologue Loxodonta africana scaffold_3360:36,029-36,036 – AATAATCT + AGATTATT
ENSMUSG00000028086_MDOM Orthologue Monodelphis domestica scaffold_9:22,299,583-22,299,590 – AATAATCT + AGATTATT
ENSMUSG00000028086_MEUG Orthologue Macropus eugenii ENSMUSG00000028086_MEUG:333-340 + AATAATCT – AGATTATT
ENSMUSG00000028086_MLUC Orthologue Myotis lucifugus ENSMUSG00000028086_MLUC:1,213-1,220 + AATAATCT – AGATTATT
ENSMUSG00000028086_MMUL Orthologue Macaca mulatta SCAFFOLD55102:147,460-147,467 – AATAATCT + AGATTATT
ENSMUSG00000028086_OANA Orthologue Ornithorhynchus anatinus ENSMUSG00000028086_OANA:207-214 + AATAATCT – AGATTATT
ENSMUSG00000028086_OCUN Orthologue Oryctolagus cuniculus scaffold_177121:79,745-79,752 – AATAATCT + AGATTATT
ENSMUSG00000028086_OGAR Orthologue Otolemur garnettii ENSMUSG00000028086_OGAR:707-714 + AATAATCT – AGATTATT
ENSMUSG00000028086_PCAP Orthologue Procavia capensis ENSMUSG00000028086_PCAP:1,545-1,552 + AATAATCT – AGATTATT
ENSMUSG00000028086_PTRO Orthologue Pan troglodytes chr3:170,954,363-170,954,370 – AATAATCT + AGATTATT
ENSMUSG00000028086_RNOR Orthologue Rattus norvegicus chr2:176,672,344-176,672,351 + AATAATCT – AGATTATT
ENSMUSG00000028086_TBEL Orthologue Tupaia belangeri ENSMUSG00000028086_TBEL:1,281-1,288 + AATAATCT – AGATTATT
ENSMUSG00000028086_TNIG Orthologue Tetraodon nigroviridis chr18:7,492,436-7,492,443 – AATTATCT + AGATAATT

Questions or comments: cisred@bcgsc.ca