FILTERS:
pvalue:0.1
Motif craMmus140875
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus140875
Discovery p-value 2.79E-03
Motif location chr6: 99,354,807-99,354,818 (-) (12 bp)
Search region location chr6: 99,354,390-99,356,293 (-) (1,904 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 27 species: Mus musculus, Bos taurus, Canis familiaris, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Danio rerio, Erinaceus europaeus, Echinops telfairi, Felis catus, Fugu rubripes, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macropus eugenii, Macaca mulatta, Ornithorhynchus anatinus, Oryctolagus cuniculus, Otolemur garnettii, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sorex araneus, Sus scrofa, Spermophilus tridecemlineatus, Tupaia belangeri
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 3 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (3 annot.): FOXJ2(7.72E-05) ,    FOXP1a(1.74E-04) ,    FOXD3(7.56E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATAsTsAmsmTs wAkwkTwAwTAT
Position frequency matrix
1 2 3 4 5 6 7 8 9 10 11 12
A 26 0 26 15 0 11 27 15 12 12 0 12
C 0 2 0 0 0 0 0 12 0 13 0 1
G 0 0 0 0 0 0 0 0 2 0 0 1
T 1 25 1 12 27 16 0 0 13 2 27 13
A T A w T w A m w m T w
1 2 3 4 5 6 7 8 9 10 11 12
A 13 27 2 13 0 0 16 27 12 1 25 1
C 1 0 0 2 0 0 0 0 0 0 0 0
G 1 0 13 0 12 0 0 0 0 0 2 0
T 12 0 12 12 15 27 11 0 15 26 0 26
w A k w k T w A w T A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000030067 Target Mus musculus chr6:99,354,807-99,354,818 + ACAATAACAATT – AATTGTTATTGT
ENSMUSG00000030067_BTAU Orthologue Bos taurus chr22:24,449,768-24,449,779 – ATAATAACAATT + AATTGTTATTAT
ENSMUSG00000030067_CFAM Orthologue Canis familiaris chr20:23,694,203-23,694,214 – ATAATAACAATT + AATTGTTATTAT
ENSMUSG00000030067_CJAC Orthologue Callithrix jacchus ENSMUSG00000030067_CJAC:902-913 – ATAATAACAATT + AATTGTTATTAT
ENSMUSG00000030067_CPOR Orthologue Cavia porcellus ENSMUSG00000030067_CPOR:1,020-1,031 + ATATTTAATCTA – TAGATTAAATAT
ENSMUSG00000030067_DNOV Orthologue Dasypus novemcinctus scaffold_26:355,858-355,869 – ATATTTAATCTA + TAGATTAAATAT
ENSMUSG00000030067_DRER Orthologue Danio rerio chr6:26,072,296-26,072,307 + ACAATTAAACTA – TAGTTTAATTGT
ENSMUSG00000030067_EEUR Orthologue Erinaceus europaeus ENSMUSG00000030067_EEUR:235-246 + ATATTTAATCTA – TAGATTAAATAT
ENSMUSG00000030067_ETEL Orthologue Echinops telfairi scaffold_302234:8,198-8,209 – ATAATAACAATT + AATTGTTATTAT
ENSMUSG00000030067_FCAT Orthologue Felis catus ENSMUSG00000030067_FCAT:869-880 – ATAATAACAATT + AATTGTTATTAT
ENSMUSG00000030067_FRUB Orthologue Fugu rubripes chrUn:89,197,000-89,197,011 – ATATTTAATCTG + CAGATTAAATAT
ENSMUSG00000030067_GGAL Orthologue Gallus gallus chr12:16,039,925-16,039,936 – TTATTTACTATT + AATAGTAAATAA
ENSMUSG00000030067_HSAP Orthologue Homo sapiens chr3:71,438,086-71,438,097 + ATAATAACAATT – AATTGTTATTAT
ENSMUSG00000030067_LAFR Orthologue Loxodonta africana scaffold_19214:12,799-12,810 – ATAATAACAATT + AATTGTTATTAT
ENSMUSG00000030067_MDOM Orthologue Monodelphis domestica scaffold_5:19,014,371-19,014,382 + ATAATAAAAATT – AATTTTTATTAT
ENSMUSG00000030067_MEUG Orthologue Macropus eugenii ENSMUSG00000030067_MEUG:93-104 + ATATTTAATCTC – GAGATTAAATAT
ENSMUSG00000030067_MMUL Orthologue Macaca mulatta SCAFFOLD75031:6,992-7,003 – ATAATAACAATT + AATTGTTATTAT
ENSMUSG00000030067_OANA Orthologue Ornithorhynchus anatinus ENSMUSG00000030067_OANA:226-237 + ATATTTAATCTA – TAGATTAAATAT
ENSMUSG00000030067_OCUN Orthologue Oryctolagus cuniculus scaffold_213555:345,726-345,737 – ATATTTAATCTA + TAGATTAAATAT
ENSMUSG00000030067_OGAR Orthologue Otolemur garnettii ENSMUSG00000030067_OGAR:592-603 + ATATTTAATCTA – TAGATTAAATAT
ENSMUSG00000030067_PPYG Orthologue Pongo pygmaeus ENSMUSG00000030067_PPYG:19-30 + ATAATTAAGTTA – TAACTTAATTAT
ENSMUSG00000030067_PTRO Orthologue Pan troglodytes chr2:73,379,656-73,379,667 + ATAATAACAATT – AATTGTTATTAT
ENSMUSG00000030067_RNOR Orthologue Rattus norvegicus chr4:134,356,156-134,356,167 + ATTATTACTCTT – AAGAGTAATAAT
ENSMUSG00000030067_SARA Orthologue Sorex araneus ENSMUSG00000030067_SARA:857-868 + ATATTTAATCTA – TAGATTAAATAT
ENSMUSG00000030067_SSCR Orthologue Sus scrofa ENSMUSG00000030067_SSCR:192-203 + ATATTTAATCTA – TAGATTAAATAT
ENSMUSG00000030067_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000030067_STRI:298-309 + ATATTTAATCTA – TAGATTAAATAT
ENSMUSG00000030067_TBEL Orthologue Tupaia belangeri ENSMUSG00000030067_TBEL:62-73 + ATAATTAAGTTA – TAACTTAATTAT

Questions or comments: cisred@bcgsc.ca