FILTERS:
pvalue:0.1
Motif craMmus143247
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus143247
Discovery p-value 2.79E-03
Motif location chr7: 45,857,938-45,857,947 (-) (10 bp)
Search region location chr7: 45,857,301-45,859,249 (-) (1,949 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 22 species: Mus musculus, Bos taurus, Canis familiaris, Cavia porcellus, Dasypus novemcinctus, Danio rerio, Equus caballus, Echinops telfairi, Felis catus, Gallus gallus, Homo sapiens, Monodelphis domestica, Myotis lucifugus, Macaca mulatta, Ornithorhynchus anatinus, Oryctolagus cuniculus, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Tupaia belangeri, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 5 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (5 annot.): POU1F1(2.51E-04) ,    RSRFC4(3.05E-04) ,    aMEF-2(5.71E-04) ,    FOXJ2(7.29E-04) ,    RSRFC4(9.18E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TAAATATTCA TGAATATTTA
Position frequency matrix
1 2 3 4 5 6 7 8 9 10
A 0 17 18 22 0 22 0 0 0 22
C 0 5 0 0 0 0 0 0 22 0
G 0 0 4 0 0 0 1 7 0 0
T 22 0 0 0 22 0 21 15 0 0
T A A A T A T T C A
1 2 3 4 5 6 7 8 9 10
A 0 0 15 21 0 22 0 0 0 22
C 0 0 7 1 0 0 0 4 0 0
G 0 22 0 0 0 0 0 0 5 0
T 22 0 0 0 22 0 22 18 17 0
T G A A T A T T T A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000030507 Target Mus musculus chr7:45,857,938-45,857,947 + TAAATATTCA – TGAATATTTA
ENSMUSG00000030507_BTAU Orthologue Bos taurus chr29:17,420,955-17,420,964 – TAAATATTCA + TGAATATTTA
ENSMUSG00000030507_CFAM Orthologue Canis familiaris chr21:45,404,084-45,404,093 + TAAATATTCA – TGAATATTTA
ENSMUSG00000030507_CPOR Orthologue Cavia porcellus ENSMUSG00000030507_CPOR:315-324 – TAAATATTCA + TGAATATTTA
ENSMUSG00000030507_DNOV Orthologue Dasypus novemcinctus scaffold_7061:35,238-35,247 + TAAATATTCA – TGAATATTTA
ENSMUSG00000030507_DRER Orthologue Danio rerio chr7:7,398,261-7,398,270 – TCGATATGCA + TGCATATCGA
ENSMUSG00000030507_ECAB Orthologue Equus caballus ENSMUSG00000030507_ECAB:359-368 + TCGATATGCA – TGCATATCGA
ENSMUSG00000030507_ETEL Orthologue Echinops telfairi scaffold_316374:111,521-111,530 + TAAATATTCA – TGAATATTTA
ENSMUSG00000030507_FCAT Orthologue Felis catus ENSMUSG00000030507_FCAT:159-168 – TAAATATTCA + TGAATATTTA
ENSMUSG00000030507_GGAL Orthologue Gallus gallus chr5:1,412,868-1,412,877 – TAAATATTCA + TGAATATTTA
ENSMUSG00000030507_HSAP Orthologue Homo sapiens chr11:20,139,022-20,139,031 + TAAATATTCA – TGAATATTTA
ENSMUSG00000030507_MDOM Orthologue Monodelphis domestica scaffold_10:66,358,102-66,358,111 + TAAATATTCA – TGAATATTTA
ENSMUSG00000030507_MLUC Orthologue Myotis lucifugus ENSMUSG00000030507_MLUC:1,210-1,219 – TAAATATTCA + TGAATATTTA
ENSMUSG00000030507_MMUL Orthologue Macaca mulatta SCAFFOLD95217:122,175-122,184 + TAAATATTCA – TGAATATTTA
ENSMUSG00000030507_OANA Orthologue Ornithorhynchus anatinus ENSMUSG00000030507_OANA:235-244 + TCAATATGCA – TGCATATTGA
ENSMUSG00000030507_OCUN Orthologue Oryctolagus cuniculus scaffold_213389:77,525-77,534 – TAAATATTCA + TGAATATTTA
ENSMUSG00000030507_PCAP Orthologue Procavia capensis ENSMUSG00000030507_PCAP:1,330-1,339 + TAAATATGCA – TGCATATTTA
ENSMUSG00000030507_PPYG Orthologue Pongo pygmaeus ENSMUSG00000030507_PPYG:1,514-1,523 + TCGATATGCA – TGCATATCGA
ENSMUSG00000030507_PTRO Orthologue Pan troglodytes chr9:20,376,021-20,376,030 + TAAATATTCA – TGAATATTTA
ENSMUSG00000030507_RNOR Orthologue Rattus norvegicus chr1:99,520,289-99,520,298 + TAAATATTCA – TGAATATTTA
ENSMUSG00000030507_TBEL Orthologue Tupaia belangeri ENSMUSG00000030507_TBEL:1,447-1,456 + TCGATATGCA – TGCATATCGA
ENSMUSG00000030507_XTRO Orthologue Xenopus tropicalis scaffold_557:624,153-624,162 – TAAATAGGCA + TGCCTATTTA

Questions or comments: cisred@bcgsc.ca