FILTERS:
pvalue:0.1
Motif craMmus146985
More information about this gene at Ensembl.org Go to UCSC
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Currently, this page only shows information about a motif if it:
+ has a discovery p-value < 0.1
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus146985
Discovery p-value 4.13E-03
Motif location chrX: 6,316,527-6,316,545 (+) (19 bp)
Search region location chrX: 6,315,894-6,317,593 (+) (1,700 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 9 species: Mus musculus, Canis familiaris, Echinops telfairi, Felis catus, Homo sapiens, Loxodonta africana, Macaca mulatta, Pan troglodytes, Rattus norvegicus
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 8 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (8 annot.): aMEF-2(5.82E-05) ,    Cdc5(2.11E-04) ,    MEF-2A(2.87E-04) ,    HOXA5(5.17E-04) ,    POU3F1(5.57E-04) ...
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TGGATTATTTAAAAAGCCA TGGCTTTTTAAATAATCCA
Position frequency matrix
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
A 0 0 0 8 0 0 9 0 0 0 9 9 7 9 9 1 0 0 8
C 1 1 2 0 1 0 0 0 0 0 0 0 1 0 0 0 8 8 0
G 0 8 7 0 1 1 0 0 0 0 0 0 0 0 0 8 0 1 0
T 8 0 0 1 7 8 0 9 9 9 0 0 1 0 0 0 1 0 1
T G G A T T A T T T A A A A A G C C A
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
A 1 0 1 0 0 0 1 0 0 9 9 9 0 8 7 1 0 0 8
C 0 1 0 8 0 0 0 0 0 0 0 0 0 1 1 0 7 8 0
G 0 8 8 0 0 0 1 0 0 0 0 0 0 0 1 0 2 1 1
T 8 0 0 1 9 9 7 9 9 0 0 0 9 0 0 8 0 0 0
T G G C T T T T T A A A T A A T C C A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000031156 Target Mus musculus chrX:6,316,527-6,316,545 + TGGATTATTTAAAAAGCCA – TGGCTTTTTAAATAATCCA
ENSMUSG00000031156_CFAM Orthologue Canis familiaris chrX:42,022,332-42,022,350 – TGGATTATTTAAAAAGCCA + TGGCTTTTTAAATAATCCA
ENSMUSG00000031156_ETEL Orthologue Echinops telfairi scaffold_323080:125,027-125,045 + TGGATTATTTAAAAAGCCA – TGGCTTTTTAAATAATCCA
ENSMUSG00000031156_FCAT Orthologue Felis catus ENSMUSG00000031156_FCAT:682-700 + CCCACTATTTAATAAATGT – ACATTTATTAAATAGTGGG
ENSMUSG00000031156_HSAP Orthologue Homo sapiens chrX:48,526,749-48,526,767 – TGGATTATTTAAAAAGCCA + TGGCTTTTTAAATAATCCA
ENSMUSG00000031156_LAFR Orthologue Loxodonta africana scaffold_25999:6,362-6,380 + TGCTGGATTTAACAAGCCA – TGGCTTGTTAAATCCAGCA
ENSMUSG00000031156_MMUL Orthologue Macaca mulatta SCAFFOLD125551:59,912-59,930 + TGGATTATTTAAAAAGCCA – TGGCTTTTTAAATAATCCA
ENSMUSG00000031156_PTRO Orthologue Pan troglodytes chrX:49,861,939-49,861,957 – TGGATTATTTAAAAAGCCA + TGGCTTTTTAAATAATCCA
ENSMUSG00000031156_RNOR Orthologue Rattus norvegicus chrX:26,705,637-26,705,655 – TGGATTATTTAAAAAGCCA + TGGCTTTTTAAATAATCCA

Questions or comments: cisred@bcgsc.ca