FILTERS:
pvalue:0.1
Motif craMmus157958
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus157958
Discovery p-value 2.79E-03
Motif location chr15: 96,370,136-96,370,145 (+) (10 bp)
Search region location chr15: 96,368,771-96,370,774 (+) (2,004 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 23 species: Mus musculus, Canis familiaris, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Danio rerio, Equus caballus, Erinaceus europaeus, Echinops telfairi, Felis catus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macropus eugenii, Macaca mulatta, Oryctolagus cuniculus, Pongo pygmaeus, Pan troglodytes, Sorex araneus, Sus scrofa, Spermophilus tridecemlineatus, Tupaia belangeri, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 4 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (4 annot.): HNF-1alpha(4.71E-05) ,    Nkx2-5(4.52E-04) ,    IPF1(5.77E-04) ,    POU3F2(7.74E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TAkTTAwyAA TTrsTAAmTA
Position frequency matrix
1 2 3 4 5 6 7 8 9 10
A 0 21 0 0 5 23 8 0 16 23
C 0 0 5 0 0 0 0 8 0 0
G 0 0 11 0 0 0 0 3 0 0
T 23 2 7 23 18 0 15 12 7 0
T A k T T A n y A A
1 2 3 4 5 6 7 8 9 10
A 0 7 12 15 0 18 23 7 2 23
C 0 0 3 0 0 0 0 11 0 0
G 0 0 8 0 0 0 0 5 0 0
T 23 16 0 8 23 5 0 0 21 0
T T r n T A A m T A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000033237 Target Mus musculus chr15:96,370,136-96,370,145 + TACTTAATAA – TTATTAAGTA
ENSMUSG00000033237_CFAM Orthologue Canis familiaris chr27:11,476,545-11,476,554 – TAGTTATTAA + TTAATAACTA
ENSMUSG00000033237_CJAC Orthologue Callithrix jacchus ENSMUSG00000033237_CJAC:537-546 + TATTTATTAA – TTAATAAATA
ENSMUSG00000033237_CPOR Orthologue Cavia porcellus ENSMUSG00000033237_CPOR:316-325 + TAGTAAATTA – TAATTTACTA
ENSMUSG00000033237_DNOV Orthologue Dasypus novemcinctus scaffold_41406:4,212-4,221 + TACTTATGTA – TACATAAGTA
ENSMUSG00000033237_DRER Orthologue Danio rerio chr4:1,283,172-1,283,181 – TATTTAATTA + TAATTAAATA
ENSMUSG00000033237_ECAB Orthologue Equus caballus ENSMUSG00000033237_ECAB:135-144 – TATTTATTAA + TTAATAAATA
ENSMUSG00000033237_EEUR Orthologue Erinaceus europaeus ENSMUSG00000033237_EEUR:1,000-1,009 – TATTTAATTA + TAATTAAATA
ENSMUSG00000033237_ETEL Orthologue Echinops telfairi scaffold_155603:6,552-6,561 – TAGTTATCAA + TTGATAACTA
ENSMUSG00000033237_FCAT Orthologue Felis catus ENSMUSG00000033237_FCAT:918-927 + TAGTTAACAA – TTGTTAACTA
ENSMUSG00000033237_HSAP Orthologue Homo sapiens chr12:44,529,591-44,529,600 + TAGTTATCAA – TTGATAACTA
ENSMUSG00000033237_LAFR Orthologue Loxodonta africana scaffold_4467:67,097-67,106 – TACTAATCAA + TTGATTAGTA
ENSMUSG00000033237_MDOM Orthologue Monodelphis domestica scaffold_31:30,107,630-30,107,639 – TAGTTAAGAA + TTCTTAACTA
ENSMUSG00000033237_MEUG Orthologue Macropus eugenii ENSMUSG00000033237_MEUG:225-234 + TTTTAATTTA – TAAATTAAAA
ENSMUSG00000033237_MMUL Orthologue Macaca mulatta SCAFFOLD100533:69,787-69,796 – TAGTTATCAA + TTGATAACTA
ENSMUSG00000033237_OCUN Orthologue Oryctolagus cuniculus scaffold_178473:13,131-13,140 – TACTAATTAA + TTAATTAGTA
ENSMUSG00000033237_PPYG Orthologue Pongo pygmaeus ENSMUSG00000033237_PPYG:903-912 – TATTTATTAA + TTAATAAATA
ENSMUSG00000033237_PTRO Orthologue Pan troglodytes chr10:45,157,809-45,157,818 + TAGTTATCAA – TTGATAACTA
ENSMUSG00000033237_SARA Orthologue Sorex araneus ENSMUSG00000033237_SARA:397-406 + TTCTTAACTA – TAGTTAAGAA
ENSMUSG00000033237_SSCR Orthologue Sus scrofa ENSMUSG00000033237_SSCR:46-55 – TATTTATTAA + TTAATAAATA
ENSMUSG00000033237_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000033237_STRI:313-322 + TAGTAAATTA – TAATTTACTA
ENSMUSG00000033237_TBEL Orthologue Tupaia belangeri ENSMUSG00000033237_TBEL:1,036-1,045 + TAGTTATCAA – TTGATAACTA
ENSMUSG00000033237_XTRO Orthologue Xenopus tropicalis scaffold_66:2,186,065-2,186,074 + TAGTTATGAA – TTCATAACTA

Questions or comments: cisred@bcgsc.ca