FILTERS:
pvalue:0.1
Motif craMmus17100
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus17100
Discovery p-value 2.79E-03
Motif location chr6: 17,431,027-17,431,034 (+) (8 bp)
Search region location chr6: 17,430,022-17,431,874 (+) (1,853 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 24 species: Mus musculus, Bos taurus, Canis familiaris, Callithrix jacchus, Dasypus novemcinctus, Danio rerio, Erinaceus europaeus, Felis catus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Myotis lucifugus, Macaca mulatta, Microcebus murinus, Ovis aries, Oryctolagus cuniculus, Otolemur garnettii, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sorex araneus, Sus scrofa, Spermophilus tridecemlineatus, Tupaia belangeri
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 1 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (1 annot.): MEF-2A(1.07E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TAGTTTAA TTAAACTA
Position frequency matrix
1 2 3 4 5 6 7 8
A 3 24 0 0 0 0 24 24
C 0 0 0 2 0 0 0 0
G 0 0 24 7 0 0 0 0
T 21 0 0 15 24 24 0 0
T A G T T T A A
1 2 3 4 5 6 7 8
A 0 0 24 24 15 0 0 21
C 0 0 0 0 7 24 0 0
G 0 0 0 0 2 0 0 0
T 24 24 0 0 0 0 24 3
T T A A A C T A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000009376 Target Mus musculus chr6:17,431,027-17,431,034 + TAGGTTAA – TTAACCTA
ENSMUSG00000009376_BTAU Orthologue Bos taurus chr4:26,999,271-26,999,278 – AAGTTTAA + TTAAACTT
ENSMUSG00000009376_CFAM Orthologue Canis familiaris chr14:58,590,997-58,591,004 + TAGTTTAA – TTAAACTA
ENSMUSG00000009376_CJAC Orthologue Callithrix jacchus ENSMUSG00000009376_CJAC:520-527 + TAGTTTAA – TTAAACTA
ENSMUSG00000009376_DNOV Orthologue Dasypus novemcinctus scaffold_1103:77,521-77,528 – TAGGTTAA + TTAACCTA
ENSMUSG00000009376_DRER Orthologue Danio rerio chr11:37,222,719-37,222,726 + TAGTTTAA – TTAAACTA
ENSMUSG00000009376_EEUR Orthologue Erinaceus europaeus ENSMUSG00000009376_EEUR:402-409 – TAGTTTAA + TTAAACTA
ENSMUSG00000009376_FCAT Orthologue Felis catus ENSMUSG00000009376_FCAT:664-671 + TAGTTTAA – TTAAACTA
ENSMUSG00000009376_HSAP Orthologue Homo sapiens chr7:115,932,462-115,932,469 + TAGGTTAA – TTAACCTA
ENSMUSG00000009376_LAFR Orthologue Loxodonta africana scaffold_197:89,838-89,845 + TAGCTTAA – TTAAGCTA
ENSMUSG00000009376_MDOM Orthologue Monodelphis domestica scaffold_22:32,314,656-32,314,663 – TAGGTTAA + TTAACCTA
ENSMUSG00000009376_MLUC Orthologue Myotis lucifugus ENSMUSG00000009376_MLUC:508-515 + TAGCTTAA – TTAAGCTA
ENSMUSG00000009376_MMUL Orthologue Macaca mulatta SCAFFOLD45011:254,039-254,046 – TAGGTTAA + TTAACCTA
ENSMUSG00000009376_MMUR Orthologue Microcebus murinus ENSMUSG00000009376_MMUR:272-279 – TAGTTTAA + TTAAACTA
ENSMUSG00000009376_OARI Orthologue Ovis aries ENSMUSG00000009376_OARI:484-491 + AAGTTTAA – TTAAACTT
ENSMUSG00000009376_OCUN Orthologue Oryctolagus cuniculus scaffold_178631:130,319-130,326 – TAGTTTAA + TTAAACTA
ENSMUSG00000009376_OGAR Orthologue Otolemur garnettii ENSMUSG00000009376_OGAR:394-401 – TAGTTTAA + TTAAACTA
ENSMUSG00000009376_PPYG Orthologue Pongo pygmaeus ENSMUSG00000009376_PPYG:526-533 + TAGTTTAA – TTAAACTA
ENSMUSG00000009376_PTRO Orthologue Pan troglodytes chr6:118,221,638-118,221,645 + TAGGTTAA – TTAACCTA
ENSMUSG00000009376_RNOR Orthologue Rattus norvegicus chr4:43,279,856-43,279,863 + TAGGTTAA – TTAACCTA
ENSMUSG00000009376_SARA Orthologue Sorex araneus ENSMUSG00000009376_SARA:400-407 – TAGTTTAA + TTAAACTA
ENSMUSG00000009376_SSCR Orthologue Sus scrofa ENSMUSG00000009376_SSCR:188-195 + AAGTTTAA – TTAAACTT
ENSMUSG00000009376_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000009376_STRI:387-394 – TAGTTTAA + TTAAACTA
ENSMUSG00000009376_TBEL Orthologue Tupaia belangeri ENSMUSG00000009376_TBEL:1,008-1,015 + TAGTTTAA – TTAAACTA

Questions or comments: cisred@bcgsc.ca