Motif craMmus180855
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Currently, this page only shows information about a motif if it:
+ has a discovery p-value <
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Filters based on species and motif discovery algorithms are not applied to the contents of this page.
This page describes one atomic motif in this cisRED database.
An atomic motif is a result returned by cisRED's motif discovery process
operating on an input sequence set. An input sequence set consists of a
search region sequence on the target genome (shown in the genome browser
view below) and corresponding sequences from other species. A motif consists
of a set of conserved sequences ('hits'). It can be represented by a
consensus sequence, a position frequency matrix and a sequence logo.
| Motif overview
|
| Atomic motif id |
craMmus180855 |
| Discovery p-value |
2.79E-03 |
| Motif location |
chr2: 87,738,748-87,738,755 (+)
(8 bp)
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| Search region location |
chr2: 87,738,345-87,740,092 (+) (1,748 bp)
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| Assembly |
Mouse, Ensembl v38 (NCBI m35)
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| Found in |
13 species:
Mus musculus,
Canis familiaris,
Dasypus novemcinctus,
Echinops telfairi,
Homo sapiens,
Loxodonta africana,
Monodelphis domestica,
Macaca mulatta,
Oryctolagus cuniculus,
Pan troglodytes,
Rattus norvegicus,
Sus scrofa,
Xenopus tropicalis
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| Found with |
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| 'De Novo' motif group ID |
This motif was not submitted for clustering.
|
Similar to
(annotation p-value) |
There are
12 annotation(s)
with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (11 annot.):
COMP1(4.79E-05)
,
aMEF-2(5.99E-05)
,
MEF-2A(1.51E-04)
,
aMEF-2(1.88E-04)
,
aMEF-2(1.95E-04)
...
ORegAnno: (1 annot.):
FoxA1(6.44E-04)
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Modules
(Co-occurring motif patterns) |
Annotation-based:
No 'de novo' modules exist in this database.
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Sequence Conservation
Sequence logo
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(+)motif |
(-)motif
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| Consensus sequence |
TTTTATTT
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AAATAAAA
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| Position frequency matrix
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|
1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
| A |
0
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0
|
1
|
0
|
10
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0
|
0
|
0
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| C |
0
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0
|
0
|
0
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0
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0
|
0
|
0
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| G |
0
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0
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0
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0
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3
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0
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0
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0
|
| T |
13
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13
|
12
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13
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0
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13
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13
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13
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|
T
|
T
|
T
|
T
|
A
|
T
|
T
|
T
|
|
|
1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
| A |
13
|
13
|
13
|
0
|
13
|
12
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13
|
13
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| C |
0
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0
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0
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3
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0
|
0
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0
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0
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| G |
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
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| T |
0
|
0
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0
|
10
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0
|
1
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0
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0
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|
A
|
A
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A
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T
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A
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A
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A
|
A
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In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.
| Site Sequence Stack |
| Ensembl gene ID |
Type |
Species |
Position |
Std |
(+)Sequence |
Std |
(-)Sequence |
| ENSMUSG00000048197 |
Target |
Mus musculus |
chr2:87,738,748-87,738,755 |
+
|
TTTTATTT |
–
|
AAATAAAA |
|
ENSMUSG00000048197_CFAM
|
Orthologue |
Canis familiaris |
chr18:43,100,455-43,100,462 |
– |
TTTTATTT |
+ |
AAATAAAA |
|
ENSMUSG00000048197_DNOV
|
Orthologue |
Dasypus novemcinctus |
scaffold_18954:4,500-4,507 |
– |
TTTTATTT |
+ |
AAATAAAA |
|
ENSMUSG00000048197_ETEL
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Orthologue |
Echinops telfairi |
scaffold_293493:198,442-198,449 |
– |
TTTTATTT |
+ |
AAATAAAA |
|
ENSMUSG00000048197_HSAP
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Orthologue |
Homo sapiens |
chr11:55,439,285-55,439,292 |
– |
TTTTGTTT |
+ |
AAACAAAA |
|
ENSMUSG00000048197_LAFR
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Orthologue |
Loxodonta africana |
scaffold_3668:117,251-117,258 |
+
|
TTTTATTT |
–
|
AAATAAAA |
|
ENSMUSG00000048197_MDOM
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Orthologue |
Monodelphis domestica |
scaffold_33:16,652,679-16,652,686 |
– |
TTTTATTT |
+ |
AAATAAAA |
|
ENSMUSG00000048197_MMUL
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Orthologue |
Macaca mulatta |
SCAFFOLD115116:157,066-157,073 |
+
|
TTTTGTTT |
–
|
AAACAAAA |
|
ENSMUSG00000048197_OCUN
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Orthologue |
Oryctolagus cuniculus |
scaffold_173414:65,642-65,649 |
+
|
TTTTATTT |
–
|
AAATAAAA |
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ENSMUSG00000048197_PTRO
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Orthologue |
Pan troglodytes |
9_random:27,082,105-27,082,112 |
– |
TTTTGTTT |
+ |
AAACAAAA |
|
ENSMUSG00000048197_RNOR
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Orthologue |
Rattus norvegicus |
chr3:71,577,481-71,577,488 |
– |
TTTTATTT |
+ |
AAATAAAA |
|
ENSMUSG00000048197_SSCR
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Orthologue |
Sus scrofa |
ENSMUSG00000048197_SSCR:152-159 |
+
|
TTATATTT |
–
|
AAATATAA |
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ENSMUSG00000048197_XTRO
|
Orthologue |
Xenopus tropicalis |
scaffold_10:4,101,398-4,101,405 |
– |
TTTTATTT |
+ |
AAATAAAA |
