Motif craMmus181295
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This page describes one atomic motif in this cisRED database.
An atomic motif is a result returned by cisRED's motif discovery process
operating on an input sequence set. An input sequence set consists of a
search region sequence on the target genome (shown in the genome browser
view below) and corresponding sequences from other species. A motif consists
of a set of conserved sequences ('hits'). It can be represented by a
consensus sequence, a position frequency matrix and a sequence logo.
| Motif overview
|
| Atomic motif id |
craMmus181295 |
| Discovery p-value |
2.79E-03 |
| Motif location |
chr2: 87,738,929-87,738,938 (+)
(10 bp)
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| Search region location |
chr2: 87,738,345-87,740,092 (+) (1,748 bp)
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| Assembly |
Mouse, Ensembl v38 (NCBI m35)
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| Found in |
14 species:
Mus musculus,
Canis familiaris,
Danio rerio,
Equus caballus,
Echinops telfairi,
Homo sapiens,
Loxodonta africana,
Monodelphis domestica,
Macaca mulatta,
Oryctolagus cuniculus,
Pan troglodytes,
Rattus norvegicus,
Sus scrofa,
Xenopus tropicalis
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| Found with |
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| 'De Novo' motif group ID |
This motif was not submitted for clustering.
|
Similar to
(annotation p-value) |
There are
4 annotation(s)
with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (4 annot.):
Nkx3-1(1.43E-04)
,
CUTL1(2.49E-04)
,
E4BP4(3.15E-04)
,
POU1F1(6.46E-04)
ORegAnno: (0 annot.): none
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Modules
(Co-occurring motif patterns) |
Annotation-based:
No 'de novo' modules exist in this database.
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Sequence Conservation
Sequence logo
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(+)motif |
(-)motif
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| Consensus sequence |
ATTrsTAATw
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sATTAwyAAT
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| Position frequency matrix
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|
1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
10 |
| A |
14
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0
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0
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6
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1
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1
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11
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14
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0
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5
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| C |
0
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0
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0
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0
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7
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2
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0
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0
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0
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0
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| G |
0
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0
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0
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8
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6
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0
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0
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0
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0
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0
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| T |
0
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14
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14
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0
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0
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11
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3
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0
|
14
|
9
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|
A
|
T
|
T
|
r
|
s
|
T
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A
|
A
|
T
|
n
|
|
|
1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
10 |
| A |
9
|
14
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0
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3
|
11
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0
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0
|
14
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14
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0
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| C |
0
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0
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0
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0
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0
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6
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8
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0
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0
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0
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| G |
0
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0
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0
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0
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2
|
7
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0
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0
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0
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0
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| T |
5
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0
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14
|
11
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1
|
1
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6
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0
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0
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14
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|
n
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A
|
T
|
T
|
A
|
s
|
y
|
A
|
A
|
T
|
|
In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.
| Site Sequence Stack |
| Ensembl gene ID |
Type |
Species |
Position |
Std |
(+)Sequence |
Std |
(-)Sequence |
| ENSMUSG00000048197 |
Target |
Mus musculus |
chr2:87,738,929-87,738,938 |
+
|
ATTACTTATT |
–
|
AATAAGTAAT |
|
ENSMUSG00000048197_CFAM
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Orthologue |
Canis familiaris |
chr18:43,101,437-43,101,446 |
– |
ATTGCTAATT |
+ |
AATTAGCAAT |
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ENSMUSG00000048197_DRER
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Orthologue |
Danio rerio |
chr15:36,011,064-36,011,073 |
– |
ATTACTAATA |
+ |
TATTAGTAAT |
|
ENSMUSG00000048197_ECAB
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Orthologue |
Equus caballus |
ENSMUSG00000048197_ECAB:346-355 |
– |
ATTGGAAATT |
+ |
AATTTCCAAT |
|
ENSMUSG00000048197_ETEL
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Orthologue |
Echinops telfairi |
scaffold_293493:198,586-198,595 |
+
|
ATTGATTATA |
–
|
TATAATCAAT |
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ENSMUSG00000048197_HSAP
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Orthologue |
Homo sapiens |
chr11:55,438,578-55,438,587 |
+
|
ATTGGTAATT |
–
|
AATTACCAAT |
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ENSMUSG00000048197_LAFR
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Orthologue |
Loxodonta africana |
scaffold_3668:115,641-115,650 |
+
|
ATTAGTAATT |
–
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AATTACTAAT |
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ENSMUSG00000048197_MDOM
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Orthologue |
Monodelphis domestica |
scaffold_33:16,652,473-16,652,482 |
+
|
ATTACCAATA |
–
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TATTGGTAAT |
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ENSMUSG00000048197_MMUL
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Orthologue |
Macaca mulatta |
SCAFFOLD115116:157,313-157,322 |
– |
ATTGGTAATT |
+ |
AATTACCAAT |
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ENSMUSG00000048197_OCUN
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Orthologue |
Oryctolagus cuniculus |
scaffold_173414:65,168-65,177 |
+
|
ATTGGTAATT |
–
|
AATTACCAAT |
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ENSMUSG00000048197_PTRO
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Orthologue |
Pan troglodytes |
9_random:27,081,400-27,081,409 |
+
|
ATTGGTAATT |
–
|
AATTACCAAT |
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ENSMUSG00000048197_RNOR
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Orthologue |
Rattus norvegicus |
chr3:71,578,288-71,578,297 |
– |
ATTGCTTATA |
+ |
TATAAGCAAT |
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ENSMUSG00000048197_SSCR
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Orthologue |
Sus scrofa |
ENSMUSG00000048197_SSCR:523-532 |
– |
ATTACTAATT |
+ |
AATTAGTAAT |
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ENSMUSG00000048197_XTRO
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Orthologue |
Xenopus tropicalis |
scaffold_10:4,102,060-4,102,069 |
– |
ATTACCAATA |
+ |
TATTGGTAAT |
