Motif craMmus181856
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This page describes one atomic motif in this cisRED database.
An atomic motif is a result returned by cisRED's motif discovery process
operating on an input sequence set. An input sequence set consists of a
search region sequence on the target genome (shown in the genome browser
view below) and corresponding sequences from other species. A motif consists
of a set of conserved sequences ('hits'). It can be represented by a
consensus sequence, a position frequency matrix and a sequence logo.
| Motif overview
|
| Atomic motif id |
craMmus181856 |
| Discovery p-value |
2.79E-03 |
| Motif location |
chr2: 87,739,172-87,739,181 (+)
(10 bp)
|
| Search region location |
chr2: 87,738,345-87,740,092 (+) (1,748 bp)
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| Assembly |
Mouse, Ensembl v38 (NCBI m35)
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| Found in |
14 species:
Mus musculus,
Canis familiaris,
Dasypus novemcinctus,
Equus caballus,
Echinops telfairi,
Homo sapiens,
Loxodonta africana,
Monodelphis domestica,
Macaca mulatta,
Oryctolagus cuniculus,
Pan troglodytes,
Rattus norvegicus,
Sus scrofa,
Xenopus tropicalis
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| Found with |
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| 'De Novo' motif group ID |
This motif was not submitted for clustering.
|
Similar to
(annotation p-value) |
There are
4 annotation(s)
with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (4 annot.):
aMEF-2(7.65E-06)
,
aMEF-2(9.14E-05)
,
POU1F1(1.82E-04)
,
TEF(4.52E-04)
ORegAnno: (0 annot.): none
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Modules
(Co-occurring motif patterns) |
Annotation-based:
No 'de novo' modules exist in this database.
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Sequence Conservation
Sequence logo
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(+)motif |
(-)motif
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| Consensus sequence |
ATkTryATAT
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ATATryAmAT
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| Position frequency matrix
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|
1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
10 |
| A |
14
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0
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0
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0
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7
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0
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11
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0
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14
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3
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| C |
0
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0
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0
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0
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0
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7
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0
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0
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0
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0
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| G |
0
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2
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6
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0
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7
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0
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0
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0
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0
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0
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| T |
0
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12
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8
|
14
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0
|
7
|
3
|
14
|
0
|
11
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|
A
|
T
|
k
|
T
|
r
|
y
|
A
|
T
|
A
|
T
|
|
|
1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
10 |
| A |
11
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0
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14
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3
|
7
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0
|
14
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8
|
12
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0
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| C |
0
|
0
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0
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0
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0
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7
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0
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6
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2
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0
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| G |
0
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0
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0
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0
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7
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0
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0
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0
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0
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0
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| T |
3
|
14
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0
|
11
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0
|
7
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0
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0
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0
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14
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|
A
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T
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A
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T
|
r
|
y
|
A
|
m
|
A
|
T
|
|
In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.
| Site Sequence Stack |
| Ensembl gene ID |
Type |
Species |
Position |
Std |
(+)Sequence |
Std |
(-)Sequence |
| ENSMUSG00000048197 |
Target |
Mus musculus |
chr2:87,739,172-87,739,181 |
+
|
ATGTATATAT |
–
|
ATATATACAT |
|
ENSMUSG00000048197_CFAM
|
Orthologue |
Canis familiaris |
chr18:43,100,397-43,100,406 |
– |
ATTTGCATAT |
+ |
ATATGCAAAT |
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ENSMUSG00000048197_DNOV
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Orthologue |
Dasypus novemcinctus |
scaffold_18954:3,869-3,878 |
– |
ATGTACATAT |
+ |
ATATGTACAT |
|
ENSMUSG00000048197_ECAB
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Orthologue |
Equus caballus |
ENSMUSG00000048197_ECAB:394-403 |
+
|
AGTTGTTTAT |
–
|
ATAAACAACT |
|
ENSMUSG00000048197_ETEL
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Orthologue |
Echinops telfairi |
scaffold_293493:197,985-197,994 |
+
|
ATGTGCATAA |
–
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TTATGCACAT |
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ENSMUSG00000048197_HSAP
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Orthologue |
Homo sapiens |
chr11:55,439,093-55,439,102 |
– |
ATGTATATAT |
+ |
ATATATACAT |
|
ENSMUSG00000048197_LAFR
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Orthologue |
Loxodonta africana |
scaffold_3668:116,989-116,998 |
– |
ATTTGTATAA |
+ |
TTATACAAAT |
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ENSMUSG00000048197_MDOM
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Orthologue |
Monodelphis domestica |
scaffold_33:16,653,632-16,653,641 |
+
|
ATGTGCATAT |
–
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ATATGCACAT |
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ENSMUSG00000048197_MMUL
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Orthologue |
Macaca mulatta |
SCAFFOLD115116:157,144-157,153 |
+
|
ATTTACATAA |
–
|
TTATGTAAAT |
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ENSMUSG00000048197_OCUN
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Orthologue |
Oryctolagus cuniculus |
scaffold_173414:66,589-66,598 |
+
|
ATTTACTTAT |
–
|
ATAAGTAAAT |
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ENSMUSG00000048197_PTRO
|
Orthologue |
Pan troglodytes |
9_random:27,081,913-27,081,922 |
– |
ATGTATATAT |
+ |
ATATATACAT |
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ENSMUSG00000048197_RNOR
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Orthologue |
Rattus norvegicus |
chr3:71,577,648-71,577,657 |
– |
ATTTACATAT |
+ |
ATATGTAAAT |
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ENSMUSG00000048197_SSCR
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Orthologue |
Sus scrofa |
ENSMUSG00000048197_SSCR:571-580 |
+
|
AGTTGTTTAT |
–
|
ATAAACAACT |
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ENSMUSG00000048197_XTRO
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Orthologue |
Xenopus tropicalis |
scaffold_10:4,101,021-4,101,030 |
+
|
ATTTGTATAT |
–
|
ATATACAAAT |
