FILTERS:
pvalue:0.1
Motif craMmus222446
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus222446
Discovery p-value 4.04E-04
Motif location chr12: 29,553,249-29,553,254 (-) (6 bp)
Search region location chr12: 29,552,963-29,554,834 (-) (1,872 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 24 species: Mus musculus, Bos taurus, Canis familiaris, Choloepus hoffmanni, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Equus caballus, Erinaceus europaeus, Echinops telfairi, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Myotis lucifugus, Macaca mulatta, Oryctolagus cuniculus, Otolemur garnettii, Procavia capensis, Pan troglodytes, Rattus norvegicus, Sorex araneus, Tupaia belangeri, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 2 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (2 annot.): aMEF-2(2.70E-05) ,    E4BP4(9.40E-05)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TATATA TATATA
Position frequency matrix
1 2 3 4 5 6
A 0 24 0 24 0 24
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 24 0 24 0 24 0
T A T A T A
1 2 3 4 5 6
A 0 24 0 24 0 24
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 24 0 24 0 24 0
T A T A T A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000044067 Target Mus musculus chr12:29,553,249-29,553,254 + TATATA – TATATA
ENSMUSG00000044067_BTAU Orthologue Bos taurus chr4:20,814,839-20,814,844 – TATATA + TATATA
ENSMUSG00000044067_CFAM Orthologue Canis familiaris chr18:16,117,948-16,117,953 + TATATA – TATATA
ENSMUSG00000044067_CHOF Orthologue Choloepus hoffmanni ENSMUSG00000044067_CHOF:47-52 – TATATA + TATATA
ENSMUSG00000044067_CJAC Orthologue Callithrix jacchus ENSMUSG00000044067_CJAC:691-696 – TATATA + TATATA
ENSMUSG00000044067_CPOR Orthologue Cavia porcellus ENSMUSG00000044067_CPOR:121-126 – TATATA + TATATA
ENSMUSG00000044067_DNOV Orthologue Dasypus novemcinctus scaffold_115201:4,205-4,210 – TATATA + TATATA
ENSMUSG00000044067_ECAB Orthologue Equus caballus ENSMUSG00000044067_ECAB:135-140 – TATATA + TATATA
ENSMUSG00000044067_EEUR Orthologue Erinaceus europaeus ENSMUSG00000044067_EEUR:79-84 – TATATA + TATATA
ENSMUSG00000044067_ETEL Orthologue Echinops telfairi scaffold_312559:2,706-2,711 – TATATA + TATATA
ENSMUSG00000044067_GGAL Orthologue Gallus gallus chr1:8,988,042-8,988,047 + TATATA – TATATA
ENSMUSG00000044067_HSAP Orthologue Homo sapiens chr7:106,704,083-106,704,088 – TATATA + TATATA
ENSMUSG00000044067_LAFR Orthologue Loxodonta africana scaffold_33859:86-91 – TATATA + TATATA
ENSMUSG00000044067_MDOM Orthologue Monodelphis domestica scaffold_22:45,186,885-45,186,890 + TATATA – TATATA
ENSMUSG00000044067_MLUC Orthologue Myotis lucifugus ENSMUSG00000044067_MLUC:141-146 – TATATA + TATATA
ENSMUSG00000044067_MMUL Orthologue Macaca mulatta SCAFFOLD115307:4,115-4,120 – TATATA + TATATA
ENSMUSG00000044067_OCUN Orthologue Oryctolagus cuniculus scaffold_102701:3,773-3,778 – TATATA + TATATA
ENSMUSG00000044067_OGAR Orthologue Otolemur garnettii ENSMUSG00000044067_OGAR:110-115 – TATATA + TATATA
ENSMUSG00000044067_PCAP Orthologue Procavia capensis ENSMUSG00000044067_PCAP:319-324 – TATATA + TATATA
ENSMUSG00000044067_PTRO Orthologue Pan troglodytes chr6:108,615,510-108,615,515 – TATATA + TATATA
ENSMUSG00000044067_RNOR Orthologue Rattus norvegicus chr6:49,664,559-49,664,564 + TATATA – TATATA
ENSMUSG00000044067_SARA Orthologue Sorex araneus ENSMUSG00000044067_SARA:120-125 – TATATA + TATATA
ENSMUSG00000044067_TBEL Orthologue Tupaia belangeri ENSMUSG00000044067_TBEL:436-441 – TATATA + TATATA
ENSMUSG00000044067_XTRO Orthologue Xenopus tropicalis scaffold_452:369,563-369,568 – TATATA + TATATA

Questions or comments: cisred@bcgsc.ca