FILTERS:
pvalue:0.1
Motif craMmus229215
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus229215
Discovery p-value 2.79E-03
Motif location chr7: 102,863,534-102,863,540 (-) (7 bp)
Search region location chr7: 102,863,120-102,865,723 (-) (2,604 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 19 species: Mus musculus, Canis familiaris, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Equus caballus, Erinaceus europaeus, Echinops telfairi, Fugu rubripes, Gallus gallus, Loxodonta africana, Monodelphis domestica, Macaca mulatta, Otolemur garnettii, Rattus norvegicus, Sorex araneus, Spermophilus tridecemlineatus, Tupaia belangeri, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 3 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (2 annot.): YY1(3.33E-04) ,    HNF-6(3.75E-04)
ORegAnno: (1 annot.): FoxA1(9.65E-04)
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TATGGAG CTCCATA
Position frequency matrix
1 2 3 4 5 6 7
A 0 19 0 0 1 19 4
C 0 0 0 0 0 0 1
G 0 0 0 17 18 0 10
T 19 0 19 2 0 0 4
T A T G G A G
1 2 3 4 5 6 7
A 4 0 0 2 19 0 19
C 10 0 18 17 0 0 0
G 1 0 0 0 0 0 0
T 4 19 1 0 0 19 0
C T C C A T A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000045013 Target Mus musculus chr7:102,863,534-102,863,540 + TATGGAA – TTCCATA
ENSMUSG00000045013_CFAM Orthologue Canis familiaris chr21:33,435,026-33,435,032 + TATGGAT – ATCCATA
ENSMUSG00000045013_CJAC Orthologue Callithrix jacchus ENSMUSG00000045013_CJAC:311-317 – TATGGAG + CTCCATA
ENSMUSG00000045013_CPOR Orthologue Cavia porcellus ENSMUSG00000045013_CPOR:379-385 – TATGGAG + CTCCATA
ENSMUSG00000045013_DNOV Orthologue Dasypus novemcinctus scaffold_17207:40,662-40,668 + TATGGAG – CTCCATA
ENSMUSG00000045013_ECAB Orthologue Equus caballus ENSMUSG00000045013_ECAB:381-387 – TATGGAG + CTCCATA
ENSMUSG00000045013_EEUR Orthologue Erinaceus europaeus ENSMUSG00000045013_EEUR:277-283 – TATGGAG + CTCCATA
ENSMUSG00000045013_ETEL Orthologue Echinops telfairi scaffold_293493:58,159-58,165 – TATGGAG + CTCCATA
ENSMUSG00000045013_FRUB Orthologue Fugu rubripes chrUn:304,389,632-304,389,638 + TATTGAT – ATCAATA
ENSMUSG00000045013_GGAL Orthologue Gallus gallus chr5:2,413,845-2,413,851 + TATGGAT – ATCCATA
ENSMUSG00000045013_LAFR Orthologue Loxodonta africana scaffold_36791:5,850-5,856 + TATGGAG – CTCCATA
ENSMUSG00000045013_MDOM Orthologue Monodelphis domestica scaffold_33:17,532,683-17,532,689 + TATTGAT – ATCAATA
ENSMUSG00000045013_MMUL Orthologue Macaca mulatta SCAFFOLD41392:27,208-27,214 + TATGGAA – TTCCATA
ENSMUSG00000045013_OGAR Orthologue Otolemur garnettii ENSMUSG00000045013_OGAR:320-326 – TATGAAG + CTTCATA
ENSMUSG00000045013_RNOR Orthologue Rattus norvegicus chr1:164,339,062-164,339,068 + TATGGAA – TTCCATA
ENSMUSG00000045013_SARA Orthologue Sorex araneus ENSMUSG00000045013_SARA:321-327 – TATGGAG + CTCCATA
ENSMUSG00000045013_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000045013_STRI:363-369 – TATGGAA + TTCCATA
ENSMUSG00000045013_TBEL Orthologue Tupaia belangeri ENSMUSG00000045013_TBEL:345-351 – TATGGAG + CTCCATA
ENSMUSG00000045013_XTRO Orthologue Xenopus tropicalis scaffold_498:103,775-103,781 – TATGGAC + GTCCATA

Questions or comments: cisred@bcgsc.ca