cisRED: cis-regulatory element database

cisRED > Mouse 3.1 > gene. ENSMUSG00000050077 > craMmus247291

Motif craMmus247291

More information about this gene at Ensembl.org

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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation

Motif overview
Atomic motif id	craMmus247291
Discovery p-value	2.79E-03
Motif location	chr16: 55,828,776-55,828,781 (+) (6 bp)
Search region location	chr16: 55,827,350-55,829,325 (+) (1,976 bp)
Assembly	Mouse, Ensembl v38 (NCBI m35)
Found in	24 species: Mus musculus, Bos taurus, Canis familiaris, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Danio rerio, Equus caballus, Echinops telfairi, Felis catus, Homo sapiens, Monodelphis domestica, Myotis lucifugus, Macaca mulatta, Oryctolagus cuniculus, Otolemur garnettii, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sorex araneus, Sus scrofa, Spermophilus tridecemlineatus, Tupaia belangeri
Found with	MotifSampler
'De Novo' motif group ID	This motif was not submitted for clustering.
Similar to (annotation p-value)	There are 15 annotation(s) with p-values below 0.001. JASPAR: (0 annot.): none TRANSFAC: (15 annot.): ATF6(3.04E-05) , ATF4(4.15E-05) , CREB(7.23E-05) , ATF3(8.02E-05) , ATF(1.32E-04) ... ORegAnno: (0 annot.): none
Modules (Co-occurring motif patterns)	Annotation-based: 104 (AIRE__ATF3) 109 (ATF__CREB) 184 (CREB__XBP-1) 240 (ATF-1__CREB) 241 (ATF6__CREB) 278 (ATF__YY1) 291 (E4F1__Pax-5) 306 (CREB__Pax-5) 414 (XBP-1__YY1) 458 (ATF6__Pax-5) 534 (120-kDa_CRE-binding_protein__HTF) 554 (ATF__HTF) 597 (ATF4__CREB) 664 (CREB__HTF) 675 (120-kDa_CRE-binding_protein__Pax-5) 679 (CREB__NF-E2) 1052 (120-kDa_CRE-binding_protein__CREB) 1058 (Pax-5__XBP-1) 1073 (ATF4__Pax-5) 1085 (ATF__Pax-5) 1114 (AIRE__CREB) 1206 (CREB__E4F1) 1229 (CREB__CREB) 1291 (CREB__NF-1) 1430 (HTF__XBP-1) 1496 (CREB__YY1) 1501 (ATF3__Pax-5) 1541 (E4F1__HTF) 1550 (CREB__Elk-1) 1573 (ATF3__CREB) No 'de novo' modules exist in this database.

Sequence Conservation

Sequence logo

(+)motif

(-)motif

Consensus sequence

ACGTCA

TGACGT

Position frequency matrix

	1	2	3	4	5	6
A	24	0	0	0	0	24
C	0	16	0	0	24	0
G	0	0	24	0	0	0
T	0	8	0	24	0	0
	A	C	G	T	C	A

Transfac

Jaspar

CSV

	1	2	3	4	5	6
A	0	0	24	0	8	0
C	0	0	0	24	0	0
G	0	24	0	0	16	0
T	24	0	0	0	0	24
	T	G	A	C	G	T

Transfac

Jaspar

CSV

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Ensembl gene ID	Type	Species	Position	Std	(+)Sequence	Std	(-)Sequence
Site Sequence Stack
ENSMUSG00000050077	Target	Mus musculus	chr16:55,828,776-55,828,781	+	ACGTCA	–	TGACGT
ENSMUSG00000050077_BTAU	Orthologue	Bos taurus	chr11:21,712,492-21,712,497	+	ACGTCA	–	TGACGT
ENSMUSG00000050077_CFAM	Orthologue	Canis familiaris	chr33:11,031,565-11,031,570	–	ACGTCA	+	TGACGT
ENSMUSG00000050077_CJAC	Orthologue	Callithrix jacchus	ENSMUSG00000050077_CJAC:132-137	+	ATGTCA	–	TGACAT
ENSMUSG00000050077_CPOR	Orthologue	Cavia porcellus	ENSMUSG00000050077_CPOR:73-78	+	ATGTCA	–	TGACAT
ENSMUSG00000050077_DNOV	Orthologue	Dasypus novemcinctus	scaffold_17761:15,307-15,312	+	ACGTCA	–	TGACGT
ENSMUSG00000050077_DRER	Orthologue	Danio rerio	chr6:16,990,944-16,990,949	+	ACGTCA	–	TGACGT
ENSMUSG00000050077_ECAB	Orthologue	Equus caballus	ENSMUSG00000050077_ECAB:104-109	+	ACGTCA	–	TGACGT
ENSMUSG00000050077_ETEL	Orthologue	Echinops telfairi	scaffold_312931:831-836	–	ACGTCA	+	TGACGT
ENSMUSG00000050077_FCAT	Orthologue	Felis catus	ENSMUSG00000050077_FCAT:173-178	+	ATGTCA	–	TGACAT
ENSMUSG00000050077_HSAP	Orthologue	Homo sapiens	chr3:102,878,771-102,878,776	–	ACGTCA	+	TGACGT
ENSMUSG00000050077_MDOM	Orthologue	Monodelphis domestica	scaffold_50:8,726,235-8,726,240	+	ACGTCA	–	TGACGT
ENSMUSG00000050077_MLUC	Orthologue	Myotis lucifugus	ENSMUSG00000050077_MLUC:340-345	+	ATGTCA	–	TGACAT
ENSMUSG00000050077_MMUL	Orthologue	Macaca mulatta	SCAFFOLD85301:68,495-68,500	–	ACGTCA	+	TGACGT
ENSMUSG00000050077_OCUN	Orthologue	Oryctolagus cuniculus	scaffold_101444:4,678-4,683	–	ACGTCA	+	TGACGT
ENSMUSG00000050077_OGAR	Orthologue	Otolemur garnettii	ENSMUSG00000050077_OGAR:159-164	+	ATGTCA	–	TGACAT
ENSMUSG00000050077_PCAP	Orthologue	Procavia capensis	ENSMUSG00000050077_PCAP:151-156	+	ATGTCA	–	TGACAT
ENSMUSG00000050077_PPYG	Orthologue	Pongo pygmaeus	ENSMUSG00000050077_PPYG:132-137	+	ATGTCA	–	TGACAT
ENSMUSG00000050077_PTRO	Orthologue	Pan troglodytes	chr2:104,358,245-104,358,250	–	ACGTCA	+	TGACGT
ENSMUSG00000050077_RNOR	Orthologue	Rattus norvegicus	chr11:45,683,699-45,683,704	–	ACGTCA	+	TGACGT
ENSMUSG00000050077_SARA	Orthologue	Sorex araneus	ENSMUSG00000050077_SARA:493-498	+	ATGTCA	–	TGACAT
ENSMUSG00000050077_SSCR	Orthologue	Sus scrofa	ENSMUSG00000050077_SSCR:93-98	–	ACGTCA	+	TGACGT
ENSMUSG00000050077_STRI	Orthologue	Spermophilus tridecemlineatus	ENSMUSG00000050077_STRI:270-275	+	ACGTCA	–	TGACGT
ENSMUSG00000050077_TBEL	Orthologue	Tupaia belangeri	ENSMUSG00000050077_TBEL:304-309	+	ACGTCA	–	TGACGT

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