FILTERS:
pvalue:0.1
Motif craMmus282631
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus282631
Discovery p-value 2.79E-03
Motif location chr7: 101,394,694-101,394,703 (-) (10 bp)
Search region location chr7: 101,393,936-101,395,814 (-) (1,879 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 23 species: Mus musculus, Canis familiaris, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Danio rerio, Equus caballus, Echinops telfairi, Felis catus, Fugu rubripes, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macropus eugenii, Macaca mulatta, Oryctolagus cuniculus, Otolemur garnettii, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sus scrofa, Tupaia belangeri
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 1 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (1 annot.): COMP1(3.56E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TwATGTACAT ATGTACATsA
Position frequency matrix
1 2 3 4 5 6 7 8 9 10
A 0 0 23 0 3 0 22 5 19 0
C 3 14 0 0 0 0 0 13 0 0
G 0 9 0 0 18 3 0 0 2 0
T 20 0 0 23 2 20 1 5 2 23
T n A T G T A m A T
1 2 3 4 5 6 7 8 9 10
A 23 2 5 1 20 2 23 0 0 20
C 0 2 0 0 3 18 0 0 9 0
G 0 0 13 0 0 0 0 0 14 3
T 0 19 5 22 0 3 0 23 0 0
A T r T A C A T n A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000043948 Target Mus musculus chr7:101,394,694-101,394,703 + TGATGGACAT – ATGTCCATCA
ENSMUSG00000043948_CFAM Orthologue Canis familiaris chr21:32,693,061-32,693,070 + TGATATACAT – ATGTATATCA
ENSMUSG00000043948_CJAC Orthologue Callithrix jacchus ENSMUSG00000043948_CJAC:265-274 + CCATGTATTT – AAATACATGG
ENSMUSG00000043948_CPOR Orthologue Cavia porcellus ENSMUSG00000043948_CPOR:373-382 + TCATGTATGT – ACATACATGA
ENSMUSG00000043948_DNOV Orthologue Dasypus novemcinctus scaffold_15543:56,921-56,930 – TGATGTACAT + ATGTACATCA
ENSMUSG00000043948_DRER Orthologue Danio rerio chr10:33,718,638-33,718,647 + TGATATAAAT – ATTTATATCA
ENSMUSG00000043948_ECAB Orthologue Equus caballus ENSMUSG00000043948_ECAB:299-308 + CCATGTACTT – AAGTACATGG
ENSMUSG00000043948_ETEL Orthologue Echinops telfairi scaffold_289059:76,520-76,529 + TCATGTACAT – ATGTACATGA
ENSMUSG00000043948_FCAT Orthologue Felis catus ENSMUSG00000043948_FCAT:211-220 + TCATGTATAT – ATATACATGA
ENSMUSG00000043948_FRUB Orthologue Fugu rubripes chrUn:56,767,338-56,767,347 – TCATATACAT + ATGTATATGA
ENSMUSG00000043948_HSAP Orthologue Homo sapiens chr11:6,148,018-6,148,027 + TGATGTAAAT – ATTTACATCA
ENSMUSG00000043948_LAFR Orthologue Loxodonta africana scaffold_19404:33,757-33,766 – TGATGTACAT + ATGTACATCA
ENSMUSG00000043948_MDOM Orthologue Monodelphis domestica scaffold_111:3,416,263-3,416,272 – CCATGTACAT + ATGTACATGG
ENSMUSG00000043948_MEUG Orthologue Macropus eugenii ENSMUSG00000043948_MEUG:231-240 + TCATTGTAAT – ATTACAATGA
ENSMUSG00000043948_MMUL Orthologue Macaca mulatta SCAFFOLD85657:5,805-5,814 + TGATGTAAAT – ATTTACATCA
ENSMUSG00000043948_OCUN Orthologue Oryctolagus cuniculus scaffold_170004:18,326-18,335 + TCATGTATAT – ATATACATGA
ENSMUSG00000043948_OGAR Orthologue Otolemur garnettii ENSMUSG00000043948_OGAR:220-229 + TCATGTACAT – ATGTACATGA
ENSMUSG00000043948_PCAP Orthologue Procavia capensis ENSMUSG00000043948_PCAP:605-614 + TCATGTACAT – ATGTACATGA
ENSMUSG00000043948_PPYG Orthologue Pongo pygmaeus ENSMUSG00000043948_PPYG:188-197 + TCATTTACAT – ATGTAAATGA
ENSMUSG00000043948_PTRO Orthologue Pan troglodytes chr9:6,287,642-6,287,651 + TGATGTAAAT – ATTTACATCA
ENSMUSG00000043948_RNOR Orthologue Rattus norvegicus chr1:163,177,515-163,177,524 + TGATGGACAT – ATGTCCATCA
ENSMUSG00000043948_SSCR Orthologue Sus scrofa ENSMUSG00000043948_SSCR:839-848 + TCATGTACGT – ACGTACATGA
ENSMUSG00000043948_TBEL Orthologue Tupaia belangeri ENSMUSG00000043948_TBEL:1,642-1,651 + TCATGTATAT – ATATACATGA

Questions or comments: cisred@bcgsc.ca