FILTERS:
pvalue:0.1
Motif craMmus28795
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus28795
Discovery p-value 2.79E-03
Motif location chr14: 79,118,583-79,118,588 (+) (6 bp)
Search region location chr14: 79,118,198-79,120,115 (+) (1,918 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 23 species: Mus musculus, Bos taurus, Canis familiaris, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Danio rerio, Erinaceus europaeus, Echinops telfairi, Felis catus, Fugu rubripes, Homo sapiens, Loxodonta africana, Monodelphis domestica, Myotis lucifugus, Oryctolagus cuniculus, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sorex araneus, Sus scrofa, Spermophilus tridecemlineatus, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 4 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (4 annot.): Pbx(8.93E-05) ,    FOXM1(1.92E-04) ,    Pbx1a(3.17E-04) ,    Pbx1(8.01E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATTCAA TTGAAT
Position frequency matrix
1 2 3 4 5 6
A 23 0 0 0 23 23
C 0 0 0 23 0 0
G 0 0 0 0 0 0
T 0 23 23 0 0 0
A T T C A A
1 2 3 4 5 6
A 0 0 0 23 23 0
C 0 0 0 0 0 0
G 0 0 23 0 0 0
T 23 23 0 0 0 23
T T G A A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000035566 Target Mus musculus chr14:79,118,583-79,118,588 + ATTCAA – TTGAAT
ENSMUSG00000035566_BTAU Orthologue Bos taurus chr12:772,498-772,503 – ATTCAA + TTGAAT
ENSMUSG00000035566_CFAM Orthologue Canis familiaris chr22:16,807,762-16,807,767 – ATTCAA + TTGAAT
ENSMUSG00000035566_CJAC Orthologue Callithrix jacchus ENSMUSG00000035566_CJAC:668-673 – ATTCAA + TTGAAT
ENSMUSG00000035566_CPOR Orthologue Cavia porcellus ENSMUSG00000035566_CPOR:1,843-1,848 – ATTCAA + TTGAAT
ENSMUSG00000035566_DNOV Orthologue Dasypus novemcinctus scaffold_20066:5,901-5,906 + ATTCAA – TTGAAT
ENSMUSG00000035566_DRER Orthologue Danio rerio chr11:32,656,206-32,656,211 + ATTCAA – TTGAAT
ENSMUSG00000035566_EEUR Orthologue Erinaceus europaeus ENSMUSG00000035566_EEUR:1,836-1,841 – ATTCAA + TTGAAT
ENSMUSG00000035566_ETEL Orthologue Echinops telfairi scaffold_314292:34,344-34,349 + ATTCAA – TTGAAT
ENSMUSG00000035566_FCAT Orthologue Felis catus ENSMUSG00000035566_FCAT:1,831-1,836 – ATTCAA + TTGAAT
ENSMUSG00000035566_FRUB Orthologue Fugu rubripes chrUn:75,677,380-75,677,385 – ATTCAA + TTGAAT
ENSMUSG00000035566_HSAP Orthologue Homo sapiens chr13:57,102,341-57,102,346 – ATTCAA + TTGAAT
ENSMUSG00000035566_LAFR Orthologue Loxodonta africana scaffold_2020:73,336-73,341 – ATTCAA + TTGAAT
ENSMUSG00000035566_MDOM Orthologue Monodelphis domestica scaffold_47:10,308,529-10,308,534 + ATTCAA – TTGAAT
ENSMUSG00000035566_MLUC Orthologue Myotis lucifugus ENSMUSG00000035566_MLUC:1,824-1,829 – ATTCAA + TTGAAT
ENSMUSG00000035566_OCUN Orthologue Oryctolagus cuniculus scaffold_214996:131,768-131,773 + ATTCAA – TTGAAT
ENSMUSG00000035566_PPYG Orthologue Pongo pygmaeus ENSMUSG00000035566_PPYG:364-369 – ATTCAA + TTGAAT
ENSMUSG00000035566_PTRO Orthologue Pan troglodytes 14_random:30,158,242-30,158,247 + ATTCAA – TTGAAT
ENSMUSG00000035566_RNOR Orthologue Rattus norvegicus chr15:66,405,558-66,405,563 – ATTCAA + TTGAAT
ENSMUSG00000035566_SARA Orthologue Sorex araneus ENSMUSG00000035566_SARA:1,832-1,837 – ATTCAA + TTGAAT
ENSMUSG00000035566_SSCR Orthologue Sus scrofa ENSMUSG00000035566_SSCR:1,901-1,906 – ATTCAA + TTGAAT
ENSMUSG00000035566_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000035566_STRI:1,854-1,859 – ATTCAA + TTGAAT
ENSMUSG00000035566_XTRO Orthologue Xenopus tropicalis scaffold_515:191,212-191,217 – ATTCAA + TTGAAT

Questions or comments: cisred@bcgsc.ca