FILTERS:
pvalue:0.1
Motif craMmus289469
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus289469
Discovery p-value 2.79E-03
Motif location chr6: 42,760,078-42,760,083 (+) (6 bp)
Search region location chr6: 42,758,815-42,760,654 (+) (1,840 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 22 species: Mus musculus, Bos taurus, Canis familiaris, Cavia porcellus, Dasypus novemcinctus, Equus caballus, Erinaceus europaeus, Echinops telfairi, Felis catus, Fugu rubripes, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macaca mulatta, Oryctolagus cuniculus, Pan troglodytes, Rattus norvegicus, Sorex araneus, Spermophilus tridecemlineatus, Tupaia belangeri, Tetraodon nigroviridis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 1 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (1 annot.): Pax-6(3.59E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATGTAT ATACAT
Position frequency matrix
1 2 3 4 5 6
A 22 0 0 1 22 0
C 0 0 0 0 0 7
G 0 0 22 0 0 0
T 0 22 0 21 0 15
A T G T A T
1 2 3 4 5 6
A 15 0 21 0 22 0
C 0 0 0 22 0 0
G 7 0 0 0 0 0
T 0 22 1 0 0 22
A T A C A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000054431 Target Mus musculus chr6:42,760,078-42,760,083 + ATGTAT – ATACAT
ENSMUSG00000054431_BTAU Orthologue Bos taurus chr4:58,669,059-58,669,064 + ATGTAT – ATACAT
ENSMUSG00000054431_CFAM Orthologue Canis familiaris chr16:8,885,620-8,885,625 – ATGTAT + ATACAT
ENSMUSG00000054431_CPOR Orthologue Cavia porcellus ENSMUSG00000054431_CPOR:63-68 + ATGTAT – ATACAT
ENSMUSG00000054431_DNOV Orthologue Dasypus novemcinctus scaffold_170048:3,195-3,200 + ATGTAT – ATACAT
ENSMUSG00000054431_ECAB Orthologue Equus caballus ENSMUSG00000054431_ECAB:196-201 + ATGTAC – GTACAT
ENSMUSG00000054431_EEUR Orthologue Erinaceus europaeus ENSMUSG00000054431_EEUR:242-247 + ATGAAT – ATTCAT
ENSMUSG00000054431_ETEL Orthologue Echinops telfairi scaffold_308532:2,151-2,156 + ATGTAC – GTACAT
ENSMUSG00000054431_FCAT Orthologue Felis catus ENSMUSG00000054431_FCAT:115-120 + ATGTAC – GTACAT
ENSMUSG00000054431_FRUB Orthologue Fugu rubripes chrUn:198,144,988-198,144,993 + ATGTAT – ATACAT
ENSMUSG00000054431_GGAL Orthologue Gallus gallus chr5:2,408,586-2,408,591 – ATGTAT + ATACAT
ENSMUSG00000054431_HSAP Orthologue Homo sapiens chr7:143,115,751-143,115,756 + ATGTAT – ATACAT
ENSMUSG00000054431_LAFR Orthologue Loxodonta africana scaffold_36964:4,499-4,504 + ATGTAC – GTACAT
ENSMUSG00000054431_MDOM Orthologue Monodelphis domestica scaffold_7:2,413,271-2,413,276 + ATGTAT – ATACAT
ENSMUSG00000054431_MMUL Orthologue Macaca mulatta SCAFFOLD30167:134,845-134,850 – ATGTAT + ATACAT
ENSMUSG00000054431_OCUN Orthologue Oryctolagus cuniculus scaffold_148675:2,132-2,137 + ATGTAT – ATACAT
ENSMUSG00000054431_PTRO Orthologue Pan troglodytes chr6:145,865,335-145,865,340 + ATGTAT – ATACAT
ENSMUSG00000054431_RNOR Orthologue Rattus norvegicus chr4:70,985,431-70,985,436 + ATGTAT – ATACAT
ENSMUSG00000054431_SARA Orthologue Sorex araneus ENSMUSG00000054431_SARA:224-229 + ATGTAC – GTACAT
ENSMUSG00000054431_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000054431_STRI:284-289 + ATGTAC – GTACAT
ENSMUSG00000054431_TBEL Orthologue Tupaia belangeri ENSMUSG00000054431_TBEL:290-295 + ATGTAC – GTACAT
ENSMUSG00000054431_TNIG Orthologue Tetraodon nigroviridis chr2:14,429,056-14,429,061 + ATGTAT – ATACAT

Questions or comments: cisred@bcgsc.ca