FILTERS:
pvalue:0.1
Motif craMmus292734
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus292734
Discovery p-value 2.79E-03
Motif location chr17: 36,379,640-36,379,647 (+) (8 bp)
Search region location chr17: 36,378,119-36,380,280 (+) (2,162 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 16 species: Mus musculus, Bos taurus, Choloepus hoffmanni, Dasypus novemcinctus, Danio rerio, Erinaceus europaeus, Echinops telfairi, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macaca mulatta, Oryctolagus cuniculus, Pan troglodytes, Rattus norvegicus, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 5 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (5 annot.): TEF(2.38E-04) ,    HNF-1alpha(5.81E-04) ,    FOXP1a(8.24E-04) ,    POU1F1(8.56E-04) ,    Nkx3-1(9.87E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATATswAT ATswATAT
Position frequency matrix
1 2 3 4 5 6 7 8
A 16 0 16 3 0 7 16 5
C 0 0 0 0 8 0 0 0
G 0 0 0 0 8 0 0 0
T 0 16 0 13 0 9 0 11
A T A T s w A T
1 2 3 4 5 6 7 8
A 11 0 9 0 13 0 16 0
C 0 0 0 8 0 0 0 0
G 0 0 0 8 0 0 0 0
T 5 16 7 0 3 16 0 16
A T w s A T A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000057801 Target Mus musculus chr17:36,379,640-36,379,647 + ATATGTAT – ATACATAT
ENSMUSG00000057801_BTAU Orthologue Bos taurus chr3:62,411,246-62,411,253 + ATATCTAT – ATAGATAT
ENSMUSG00000057801_CHOF Orthologue Choloepus hoffmanni ENSMUSG00000057801_CHOF:160-167 – ATATCAAA + TTTGATAT
ENSMUSG00000057801_DNOV Orthologue Dasypus novemcinctus scaffold_71203:736-743 – ATAACTAT + ATAGTTAT
ENSMUSG00000057801_DRER Orthologue Danio rerio chr15:36,003,630-36,003,637 – ATATGTAT + ATACATAT
ENSMUSG00000057801_EEUR Orthologue Erinaceus europaeus ENSMUSG00000057801_EEUR:207-214 – ATAACAAA + TTTGTTAT
ENSMUSG00000057801_ETEL Orthologue Echinops telfairi scaffold_35478:974-981 – ATATGTAT + ATACATAT
ENSMUSG00000057801_GGAL Orthologue Gallus gallus chr5:2,408,957-2,408,964 + ATATCAAA – TTTGATAT
ENSMUSG00000057801_HSAP Orthologue Homo sapiens chr6:29,215,639-29,215,646 – ATATCAAT + ATTGATAT
ENSMUSG00000057801_LAFR Orthologue Loxodonta africana scaffold_50537:37,993-38,000 – ATATGTAA + TTACATAT
ENSMUSG00000057801_MDOM Orthologue Monodelphis domestica scaffold_33:16,792,123-16,792,130 + ATATCTAT – ATAGATAT
ENSMUSG00000057801_MMUL Orthologue Macaca mulatta SCAFFOLD35633:12,395-12,402 – ATATGTAT + ATACATAT
ENSMUSG00000057801_OCUN Orthologue Oryctolagus cuniculus scaffold_185279:4,964-4,971 – ATATGTAT + ATACATAT
ENSMUSG00000057801_PTRO Orthologue Pan troglodytes chr5:29,737,945-29,737,952 – ATATCAAA + TTTGATAT
ENSMUSG00000057801_RNOR Orthologue Rattus norvegicus chr20:189,815-189,822 + ATATGAAT – ATTCATAT
ENSMUSG00000057801_XTRO Orthologue Xenopus tropicalis scaffold_786:551,489-551,496 + ATAAGAAT – ATTCTTAT

Questions or comments: cisred@bcgsc.ca