FILTERS:
pvalue:0.1
Motif craMmus294335
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus294335
Discovery p-value 2.79E-03
Motif location chr10: 129,137,490-129,137,495 (-) (6 bp)
Search region location chr10: 129,136,427-129,138,155 (-) (1,729 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 24 species: Mus musculus, Canis familiaris, Choloepus hoffmanni, Cavia porcellus, Dasypus novemcinctus, Danio rerio, Erinaceus europaeus, Echinops telfairi, Fugu rubripes, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Myotis lucifugus, Oryctolagus cuniculus, Otolemur garnettii, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sorex araneus, Spermophilus tridecemlineatus, Tupaia belangeri, Tetraodon nigroviridis, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 6 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (5 annot.): C-EBPgamma(2.13E-04) ,    SRY(3.64E-04) ,    POU2F1(3.67E-04) ,    VDR(9.05E-04) ,    CUTL1(9.19E-04)
ORegAnno: (1 annot.): FoxA1(6.44E-04)
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATACAT ATGTAT
Position frequency matrix
1 2 3 4 5 6
A 24 0 24 0 24 0
C 0 0 0 24 0 0
G 0 0 0 0 0 0
T 0 24 0 0 0 24
A T A C A T
1 2 3 4 5 6
A 24 0 0 0 24 0
C 0 0 0 0 0 0
G 0 0 24 0 0 0
T 0 24 0 24 0 24
A T G T A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000058304 Target Mus musculus chr10:129,137,490-129,137,495 + ATACAT – ATGTAT
ENSMUSG00000058304_CFAM Orthologue Canis familiaris chr14:3,009,495-3,009,500 + ATACAT – ATGTAT
ENSMUSG00000058304_CHOF Orthologue Choloepus hoffmanni ENSMUSG00000058304_CHOF:314-319 – ATACAT + ATGTAT
ENSMUSG00000058304_CPOR Orthologue Cavia porcellus ENSMUSG00000058304_CPOR:145-150 – ATACAT + ATGTAT
ENSMUSG00000058304_DNOV Orthologue Dasypus novemcinctus scaffold_68607:6,070-6,075 – ATACAT + ATGTAT
ENSMUSG00000058304_DRER Orthologue Danio rerio chr15:36,001,155-36,001,160 – ATACAT + ATGTAT
ENSMUSG00000058304_EEUR Orthologue Erinaceus europaeus ENSMUSG00000058304_EEUR:686-691 – ATACAT + ATGTAT
ENSMUSG00000058304_ETEL Orthologue Echinops telfairi scaffold_303156:41,734-41,739 – ATACAT + ATGTAT
ENSMUSG00000058304_FRUB Orthologue Fugu rubripes chrUn:265,454,824-265,454,829 – ATACAT + ATGTAT
ENSMUSG00000058304_GGAL Orthologue Gallus gallus chr5:2,402,013-2,402,018 + ATACAT – ATGTAT
ENSMUSG00000058304_HSAP Orthologue Homo sapiens chr12:54,067,497-54,067,502 – ATACAT + ATGTAT
ENSMUSG00000058304_LAFR Orthologue Loxodonta africana scaffold_33378:23,412-23,417 + ATACAT – ATGTAT
ENSMUSG00000058304_MDOM Orthologue Monodelphis domestica scaffold_33:16,823,014-16,823,019 + ATACAT – ATGTAT
ENSMUSG00000058304_MLUC Orthologue Myotis lucifugus ENSMUSG00000058304_MLUC:177-182 – ATACAT + ATGTAT
ENSMUSG00000058304_OCUN Orthologue Oryctolagus cuniculus scaffold_212207:42,904-42,909 + ATACAT – ATGTAT
ENSMUSG00000058304_OGAR Orthologue Otolemur garnettii ENSMUSG00000058304_OGAR:332-337 – ATACAT + ATGTAT
ENSMUSG00000058304_PPYG Orthologue Pongo pygmaeus ENSMUSG00000058304_PPYG:70-75 – ATACAT + ATGTAT
ENSMUSG00000058304_PTRO Orthologue Pan troglodytes chr10:55,199,448-55,199,453 – ATACAT + ATGTAT
ENSMUSG00000058304_RNOR Orthologue Rattus norvegicus chr7:7,606,226-7,606,231 + ATACAT – ATGTAT
ENSMUSG00000058304_SARA Orthologue Sorex araneus ENSMUSG00000058304_SARA:334-339 – ATACAT + ATGTAT
ENSMUSG00000058304_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000058304_STRI:438-443 – ATACAT + ATGTAT
ENSMUSG00000058304_TBEL Orthologue Tupaia belangeri ENSMUSG00000058304_TBEL:747-752 – ATACAT + ATGTAT
ENSMUSG00000058304_TNIG Orthologue Tetraodon nigroviridis chr16:4,603,211-4,603,216 – ATACAT + ATGTAT
ENSMUSG00000058304_XTRO Orthologue Xenopus tropicalis scaffold_10:4,248,049-4,248,054 + ATACAT – ATGTAT

Questions or comments: cisred@bcgsc.ca