FILTERS:
pvalue:0.1
Motif craMmus296708
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus296708
Discovery p-value 2.79E-03
Motif location chr10: 129,136,526-129,136,531 (-) (6 bp)
Search region location chr10: 129,136,427-129,138,155 (-) (1,729 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 19 species: Mus musculus, Cavia porcellus, Dasypus novemcinctus, Danio rerio, Erinaceus europaeus, Echinops telfairi, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macaca mulatta, Oryctolagus cuniculus, Otolemur garnettii, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Spermophilus tridecemlineatus, Tupaia belangeri, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 5 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (5 annot.): CUTL1(2.49E-04) ,    RSRFC4(4.60E-04) ,    aMEF-2(5.89E-04) ,    RSRFC4(6.51E-04) ,    MRF-2(9.63E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATATAA TTATAT
Position frequency matrix
1 2 3 4 5 6
A 19 0 18 0 19 19
C 0 0 0 0 0 0
G 0 0 1 0 0 0
T 0 19 0 19 0 0
A T A T A A
1 2 3 4 5 6
A 0 0 19 0 19 0
C 0 0 0 1 0 0
G 0 0 0 0 0 0
T 19 19 0 18 0 19
T T A T A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000058304 Target Mus musculus chr10:129,136,526-129,136,531 + ATATAA – TTATAT
ENSMUSG00000058304_CPOR Orthologue Cavia porcellus ENSMUSG00000058304_CPOR:495-500 – ATATAA + TTATAT
ENSMUSG00000058304_DNOV Orthologue Dasypus novemcinctus scaffold_68607:4,414-4,419 – ATATAA + TTATAT
ENSMUSG00000058304_DRER Orthologue Danio rerio chr15:36,001,960-36,001,965 + ATATAA – TTATAT
ENSMUSG00000058304_EEUR Orthologue Erinaceus europaeus ENSMUSG00000058304_EEUR:183-188 – ATATAA + TTATAT
ENSMUSG00000058304_ETEL Orthologue Echinops telfairi scaffold_303156:40,312-40,317 – ATATAA + TTATAT
ENSMUSG00000058304_GGAL Orthologue Gallus gallus chr5:2,401,491-2,401,496 + ATATAA – TTATAT
ENSMUSG00000058304_HSAP Orthologue Homo sapiens chr12:54,068,391-54,068,396 – ATATAA + TTATAT
ENSMUSG00000058304_LAFR Orthologue Loxodonta africana scaffold_33378:24,072-24,077 + ATATAA – TTATAT
ENSMUSG00000058304_MDOM Orthologue Monodelphis domestica scaffold_33:16,826,117-16,826,122 + ATATAA – TTATAT
ENSMUSG00000058304_MMUL Orthologue Macaca mulatta SCAFFOLD70084:59,982-59,987 + ATATAA – TTATAT
ENSMUSG00000058304_OCUN Orthologue Oryctolagus cuniculus scaffold_212207:42,977-42,982 + ATATAA – TTATAT
ENSMUSG00000058304_OGAR Orthologue Otolemur garnettii ENSMUSG00000058304_OGAR:51-56 – ATATAA + TTATAT
ENSMUSG00000058304_PPYG Orthologue Pongo pygmaeus ENSMUSG00000058304_PPYG:238-243 – ATATAA + TTATAT
ENSMUSG00000058304_PTRO Orthologue Pan troglodytes chr10:55,198,955-55,198,960 – ATATAA + TTATAT
ENSMUSG00000058304_RNOR Orthologue Rattus norvegicus chr7:7,605,312-7,605,317 + ATATAA – TTATAT
ENSMUSG00000058304_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000058304_STRI:59-64 – ATATAA + TTATAT
ENSMUSG00000058304_TBEL Orthologue Tupaia belangeri ENSMUSG00000058304_TBEL:475-480 – ATGTAA + TTACAT
ENSMUSG00000058304_XTRO Orthologue Xenopus tropicalis scaffold_10:4,249,489-4,249,494 + ATATAA – TTATAT

Questions or comments: cisred@bcgsc.ca