FILTERS:
pvalue:0.1
Motif craMmus297193
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus297193
Discovery p-value 2.79E-03
Motif location chr16: 59,046,674-59,046,679 (-) (6 bp)
Search region location chr16: 59,046,280-59,047,979 (-) (1,700 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 20 species: Mus musculus, Bos taurus, Canis familiaris, Cavia porcellus, Dasypus novemcinctus, Danio rerio, Echinops telfairi, Felis catus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macaca mulatta, Oryctolagus cuniculus, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sus scrofa, Spermophilus tridecemlineatus, Tupaia belangeri, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 3 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (3 annot.): Cdx-2(1.06E-04) ,    CUTL1(3.41E-04) ,    STAT5A(7.80E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence AATAAA TTTATT
Position frequency matrix
1 2 3 4 5 6
A 20 20 0 20 20 20
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 0 0 20 0 0 0
A A T A A A
1 2 3 4 5 6
A 0 0 0 20 0 0
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 20 20 20 0 20 20
T T T A T T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000060057 Target Mus musculus chr16:59,046,674-59,046,679 + AATAAA – TTTATT
ENSMUSG00000060057_BTAU Orthologue Bos taurus chr1:22,337,201-22,337,206 – AATAAA + TTTATT
ENSMUSG00000060057_CFAM Orthologue Canis familiaris chr33:8,119,338-8,119,343 – AATAAA + TTTATT
ENSMUSG00000060057_CPOR Orthologue Cavia porcellus ENSMUSG00000060057_CPOR:480-485 – AATAAA + TTTATT
ENSMUSG00000060057_DNOV Orthologue Dasypus novemcinctus scaffold_117429:1,436-1,441 – AATAAA + TTTATT
ENSMUSG00000060057_DRER Orthologue Danio rerio chr15:35,959,020-35,959,025 + AATAAA – TTTATT
ENSMUSG00000060057_ETEL Orthologue Echinops telfairi scaffold_293493:72,123-72,128 – AATAAA + TTTATT
ENSMUSG00000060057_FCAT Orthologue Felis catus ENSMUSG00000060057_FCAT:125-130 – AATAAA + TTTATT
ENSMUSG00000060057_HSAP Orthologue Homo sapiens chr3:99,370,135-99,370,140 – AATAAA + TTTATT
ENSMUSG00000060057_LAFR Orthologue Loxodonta africana scaffold_34260:12,458-12,463 + AATAAA – TTTATT
ENSMUSG00000060057_MDOM Orthologue Monodelphis domestica scaffold_33:18,557,284-18,557,289 + AATAAA – TTTATT
ENSMUSG00000060057_MMUL Orthologue Macaca mulatta SCAFFOLD115228:33,508-33,513 – AATAAA + TTTATT
ENSMUSG00000060057_OCUN Orthologue Oryctolagus cuniculus scaffold_87407:4,929-4,934 – AATAAA + TTTATT
ENSMUSG00000060057_PPYG Orthologue Pongo pygmaeus ENSMUSG00000060057_PPYG:453-458 – AATAAA + TTTATT
ENSMUSG00000060057_PTRO Orthologue Pan troglodytes chr2:100,532,209-100,532,214 – AATAAA + TTTATT
ENSMUSG00000060057_RNOR Orthologue Rattus norvegicus chr11:42,171,537-42,171,542 – AATAAA + TTTATT
ENSMUSG00000060057_SSCR Orthologue Sus scrofa ENSMUSG00000060057_SSCR:379-384 – AATAAA + TTTATT
ENSMUSG00000060057_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000060057_STRI:110-115 + AATAAA – TTTATT
ENSMUSG00000060057_TBEL Orthologue Tupaia belangeri ENSMUSG00000060057_TBEL:521-526 – AATAAA + TTTATT
ENSMUSG00000060057_XTRO Orthologue Xenopus tropicalis scaffold_786:283,404-283,409 – AATAAA + TTTATT

Questions or comments: cisred@bcgsc.ca