Motif craMmus299092
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This page describes one atomic motif in this cisRED database.
An atomic motif is a result returned by cisRED's motif discovery process
operating on an input sequence set. An input sequence set consists of a
search region sequence on the target genome (shown in the genome browser
view below) and corresponding sequences from other species. A motif consists
of a set of conserved sequences ('hits'). It can be represented by a
consensus sequence, a position frequency matrix and a sequence logo.
| Motif overview
|
| Atomic motif id |
craMmus299092 |
| Discovery p-value |
2.79E-03 |
| Motif location |
chr7: 104,309,445-104,309,454 (+)
(10 bp)
|
| Search region location |
chr7: 104,308,334-104,310,277 (+) (1,944 bp)
|
| Assembly |
Mouse, Ensembl v38 (NCBI m35)
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| Found in |
13 species:
Mus musculus,
Canis familiaris,
Dasypus novemcinctus,
Danio rerio,
Echinops telfairi,
Homo sapiens,
Loxodonta africana,
Monodelphis domestica,
Myotis lucifugus,
Macaca mulatta,
Oryctolagus cuniculus,
Pan troglodytes,
Rattus norvegicus
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| Found with |
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| 'De Novo' motif group ID |
This motif was not submitted for clustering.
|
Similar to
(annotation p-value) |
There are
7 annotation(s)
with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (7 annot.):
C-EBPgamma(5.54E-05)
,
RSRFC4(6.31E-05)
,
RSRFC4(7.46E-05)
,
POU1F1(1.48E-04)
,
IPF1(1.61E-04)
...
ORegAnno: (0 annot.): none
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Modules
(Co-occurring motif patterns) |
Annotation-based:
No 'de novo' modules exist in this database.
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Sequence Conservation
Sequence logo
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(+)motif |
(-)motif
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| Consensus sequence |
ATwwAwTAAT
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ATTAsTssAT
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| Position frequency matrix
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|
1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
10 |
| A |
13
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2
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5
|
7
|
9
|
8
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0
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13
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9
|
0
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| C |
0
|
0
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0
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0
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4
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0
|
0
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0
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0
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0
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| G |
0
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0
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0
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0
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0
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0
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0
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0
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0
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0
|
| T |
0
|
11
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8
|
6
|
0
|
5
|
13
|
0
|
4
|
13
|
|
A
|
T
|
n
|
w
|
A
|
n
|
T
|
A
|
A
|
T
|
|
|
1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
10 |
| A |
13
|
4
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0
|
13
|
5
|
0
|
6
|
8
|
11
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0
|
| C |
0
|
0
|
0
|
0
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0
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0
|
0
|
0
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0
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0
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| G |
0
|
0
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0
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0
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0
|
4
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0
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0
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0
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0
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| T |
0
|
9
|
13
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0
|
8
|
9
|
7
|
5
|
2
|
13
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|
A
|
T
|
T
|
A
|
n
|
T
|
w
|
n
|
A
|
T
|
|
In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.
| Site Sequence Stack |
| Ensembl gene ID |
Type |
Species |
Position |
Std |
(+)Sequence |
Std |
(-)Sequence |
| ENSMUSG00000062147 |
Target |
Mus musculus |
chr7:104,309,445-104,309,454 |
+
|
ATTTAATAAT |
–
|
ATTATTAAAT |
|
ENSMUSG00000062147_CFAM
|
Orthologue |
Canis familiaris |
chr21:34,596,231-34,596,240 |
– |
ATTTATTAAT |
+ |
ATTAATAAAT |
|
ENSMUSG00000062147_DNOV
|
Orthologue |
Dasypus novemcinctus |
scaffold_61181:1,757-1,766 |
– |
AATACATATT |
+ |
AATATGTATT |
|
ENSMUSG00000062147_DRER
|
Orthologue |
Danio rerio |
chr15:35,995,882-35,995,891 |
– |
ATAAAATAAT |
+ |
ATTATTTTAT |
|
ENSMUSG00000062147_ETEL
|
Orthologue |
Echinops telfairi |
scaffold_317572:92,449-92,458 |
– |
ATAACTTATT |
+ |
AATAAGTTAT |
|
ENSMUSG00000062147_HSAP
|
Orthologue |
Homo sapiens |
chr11:7,776,101-7,776,110 |
– |
ATATAATAAT |
+ |
ATTATTATAT |
|
ENSMUSG00000062147_LAFR
|
Orthologue |
Loxodonta africana |
scaffold_7771:31,391-31,400 |
+
|
ATTAATTAAT |
–
|
ATTAATTAAT |
|
ENSMUSG00000062147_MDOM
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Orthologue |
Monodelphis domestica |
scaffold_33:17,419,217-17,419,226 |
– |
ATTTAATATT |
+ |
AATATTAAAT |
|
ENSMUSG00000062147_MLUC
|
Orthologue |
Myotis lucifugus |
ENSMUSG00000062147_MLUC:313-322 |
+
|
AATAATTATT |
–
|
AATAATTATT |
|
ENSMUSG00000062147_MMUL
|
Orthologue |
Macaca mulatta |
SCAFFOLD105816:44,985-44,994 |
+
|
ATATAATAAT |
–
|
ATTATTATAT |
|
ENSMUSG00000062147_OCUN
|
Orthologue |
Oryctolagus cuniculus |
scaffold_207842:13,406-13,415 |
+
|
ATTACTTAAT |
–
|
ATTAAGTAAT |
|
ENSMUSG00000062147_PTRO
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Orthologue |
Pan troglodytes |
chr9:7,896,199-7,896,208 |
– |
ATATAATAAT |
+ |
ATTATTATAT |
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ENSMUSG00000062147_RNOR
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Orthologue |
Rattus norvegicus |
chr1:165,974,325-165,974,334 |
– |
ATTACATAAT |
+ |
ATTATGTAAT |
