FILTERS:
pvalue:0.1
Motif craMmus30197
More information about this gene at Ensembl.org Go to UCSC
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+ has a discovery p-value < 0.1
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus30197
Discovery p-value 2.79E-03
Motif location chr2: 91,776,300-91,776,309 (+) (10 bp)
Search region location chr2: 91,775,965-91,778,164 (+) (2,200 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 22 species: Mus musculus, Bos taurus, Canis familiaris, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Equus caballus, Erinaceus europaeus, Echinops telfairi, Fugu rubripes, Homo sapiens, Myotis lucifugus, Macaca mulatta, Oryctolagus cuniculus, Otolemur garnettii, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sorex araneus, Spermophilus tridecemlineatus, Tupaia belangeri
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 0 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (0 annot.): none
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 No annotation-based modules contain this motif.
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence GTGCGTCTGT ACAGACGCAC
Position frequency matrix
1 2 3 4 5 6 7 8 9 10
A 0 0 0 2 0 0 4 0 0 0
C 2 0 0 20 0 6 13 0 0 0
G 20 0 22 0 22 0 5 0 22 7
T 0 22 0 0 0 16 0 22 0 15
G T G C G T m T G T
1 2 3 4 5 6 7 8 9 10
A 15 0 22 0 16 0 0 0 22 0
C 7 22 0 5 0 22 0 22 0 20
G 0 0 0 13 6 0 20 0 0 2
T 0 0 0 4 0 0 2 0 0 0
A C A s A C G C A C

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000040495 Target Mus musculus chr2:91,776,300-91,776,309 + GTGCGTATGT – ACATACGCAC
ENSMUSG00000040495_BTAU Orthologue Bos taurus chr15:48,229,921-48,229,930 – GTGCGTGTGT + ACACACGCAC
ENSMUSG00000040495_CFAM Orthologue Canis familiaris chr18:46,114,680-46,114,689 + GTGCGTGTGT – ACACACGCAC
ENSMUSG00000040495_CJAC Orthologue Callithrix jacchus ENSMUSG00000040495_CJAC:123-132 + GTGCGTCTGT – ACAGACGCAC
ENSMUSG00000040495_CPOR Orthologue Cavia porcellus ENSMUSG00000040495_CPOR:175-184 + CTGAGCCTGG – CCAGGCTCAG
ENSMUSG00000040495_DNOV Orthologue Dasypus novemcinctus scaffold_70118:3,980-3,989 – GTGCGCCTGG + CCAGGCGCAC
ENSMUSG00000040495_ECAB Orthologue Equus caballus ENSMUSG00000040495_ECAB:126-135 + GTGCGTGTGT – ACACACGCAC
ENSMUSG00000040495_EEUR Orthologue Erinaceus europaeus ENSMUSG00000040495_EEUR:1,810-1,819 + GTGCGTCTGG – CCAGACGCAC
ENSMUSG00000040495_ETEL Orthologue Echinops telfairi scaffold_210307:7,379-7,388 + GTGCGCCTGG – CCAGGCGCAC
ENSMUSG00000040495_FRUB Orthologue Fugu rubripes chrUn:81,767,552-81,767,561 + GTGCGCGTGT – ACACGCGCAC
ENSMUSG00000040495_HSAP Orthologue Homo sapiens chr11:46,366,276-46,366,285 – GTGCGTCTGT + ACAGACGCAC
ENSMUSG00000040495_MLUC Orthologue Myotis lucifugus ENSMUSG00000040495_MLUC:46-55 – GTGCGTCTGT + ACAGACGCAC
ENSMUSG00000040495_MMUL Orthologue Macaca mulatta SCAFFOLD75856:3,258-3,267 – GTGCGTCTGT + ACAGACGCAC
ENSMUSG00000040495_OCUN Orthologue Oryctolagus cuniculus scaffold_186388:1,328-1,337 – GTGCGCCTGG + CCAGGCGCAC
ENSMUSG00000040495_OGAR Orthologue Otolemur garnettii ENSMUSG00000040495_OGAR:1,677-1,686 + GTGCGTCTGG – CCAGACGCAC
ENSMUSG00000040495_PCAP Orthologue Procavia capensis ENSMUSG00000040495_PCAP:705-714 + CTGAGCCTGG – CCAGGCTCAG
ENSMUSG00000040495_PPYG Orthologue Pongo pygmaeus ENSMUSG00000040495_PPYG:105-114 + GTGCGTCTGT – ACAGACGCAC
ENSMUSG00000040495_PTRO Orthologue Pan troglodytes chr9:46,876,263-46,876,272 – GTGCGTCTGT + ACAGACGCAC
ENSMUSG00000040495_RNOR Orthologue Rattus norvegicus chr3:76,201,827-76,201,836 + GTGCGTATGT – ACATACGCAC
ENSMUSG00000040495_SARA Orthologue Sorex araneus ENSMUSG00000040495_SARA:59-68 + GTGCGTGTGT – ACACACGCAC
ENSMUSG00000040495_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000040495_STRI:150-159 + GTGCGTATGT – ACATACGCAC
ENSMUSG00000040495_TBEL Orthologue Tupaia belangeri ENSMUSG00000040495_TBEL:116-125 + GTGCGTATGT – ACATACGCAC

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