FILTERS:
pvalue:0.1
Motif craMmus30436
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus30436
Discovery p-value 2.79E-03
Motif location chr6: 53,250,677-53,250,688 (+) (12 bp)
Search region location chr6: 53,249,130-53,250,864 (+) (1,735 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 25 species: Mus musculus, Bos taurus, Canis familiaris, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Danio rerio, Echinops telfairi, Felis catus, Fugu rubripes, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Myotis lucifugus, Macaca mulatta, Otolemur garnettii, Procavia capensis, Papio cynocephalus, Pan troglodytes, Rattus norvegicus, Sus scrofa, Tupaia belangeri, Tetraodon nigroviridis, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 4 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (4 annot.): FOXP3(3.69E-04) ,    AR(4.07E-04) ,    HNF-4alpha1(5.05E-04) ,    COUP(6.31E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence AATswTTkmkmA TkmkmAAswATT
Position frequency matrix
1 2 3 4 5 6 7 8 9 10 11 12
A 24 25 0 0 12 0 0 0 12 0 12 24
C 0 0 0 13 0 0 3 0 13 0 13 0
G 0 0 0 12 0 0 0 10 0 12 0 0
T 1 0 25 0 13 25 22 15 0 13 0 1
A A T s w T T k m k m A
1 2 3 4 5 6 7 8 9 10 11 12
A 1 0 13 0 15 22 25 13 0 25 0 1
C 0 0 12 0 10 0 0 0 12 0 0 0
G 0 13 0 13 0 3 0 0 13 0 0 0
T 24 12 0 12 0 0 0 12 0 0 25 24
T k m k m A A w s A T T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000038157 Target Mus musculus chr6:53,250,677-53,250,688 + AATCTTTGCTCA – TGAGCAAAGATT
ENSMUSG00000038157_BTAU Orthologue Bos taurus chr4:37,893,065-37,893,076 + AATCTTTGCTCA – TGAGCAAAGATT
ENSMUSG00000038157_CFAM Orthologue Canis familiaris chr14:44,440,673-44,440,684 + AATCTTTGCTCA – TGAGCAAAGATT
ENSMUSG00000038157_CJAC Orthologue Callithrix jacchus ENSMUSG00000038157_CJAC:188-199 + AATGATTTAGAA – TTCTAAATCATT
ENSMUSG00000038157_CPOR Orthologue Cavia porcellus ENSMUSG00000038157_CPOR:1,434-1,445 + AATGATTTAGAA – TTCTAAATCATT
ENSMUSG00000038157_DNOV Orthologue Dasypus novemcinctus scaffold_1857:104,438-104,449 + AATGATTTAGAA – TTCTAAATCATT
ENSMUSG00000038157_DRER Orthologue Danio rerio chr19:21,437,053-21,437,064 – AATGATTTAGAA + TTCTAAATCATT
ENSMUSG00000038157_ETEL Orthologue Echinops telfairi scaffold_311153:45,893-45,904 + AATCTTCGCTCT – AGAGCGAAGATT
ENSMUSG00000038157_FCAT Orthologue Felis catus ENSMUSG00000038157_FCAT:1,490-1,501 + AATGATTTAGAA – TTCTAAATCATT
ENSMUSG00000038157_FRUB Orthologue Fugu rubripes chrUn:103,602,963-103,602,974 – AATCTTTTCTCA + TGAGAAAAGATT
ENSMUSG00000038157_GGAL Orthologue Gallus gallus chr2:32,386,284-32,386,295 + AATGATTTAGAA – TTCTAAATCATT
ENSMUSG00000038157_HSAP Orthologue Homo sapiens chr7:28,222,216-28,222,227 + AATCTTTGCTCA – TGAGCAAAGATT
ENSMUSG00000038157_LAFR Orthologue Loxodonta africana scaffold_7484:63,864-63,875 – AATCTTCGCTCA + TGAGCGAAGATT
ENSMUSG00000038157_MDOM Orthologue Monodelphis domestica scaffold_7:91,829,918-91,829,929 – AATCTTCTCTCA + TGAGAGAAGATT
ENSMUSG00000038157_MLUC Orthologue Myotis lucifugus ENSMUSG00000038157_MLUC:1,564-1,575 + AATGATTTAGAA – TTCTAAATCATT
ENSMUSG00000038157_MMUL Orthologue Macaca mulatta SCAFFOLD25098:85,952-85,963 + AATCTTTGCTCA – TGAGCAAAGATT
ENSMUSG00000038157_OGAR Orthologue Otolemur garnettii ENSMUSG00000038157_OGAR:1,577-1,588 + AATCTTTGCTCA – TGAGCAAAGATT
ENSMUSG00000038157_PCAP Orthologue Procavia capensis ENSMUSG00000038157_PCAP:483-494 + AATGATTTAGAA – TTCTAAATCATT
ENSMUSG00000038157_PCYN Orthologue Papio cynocephalus ENSMUSG00000038157_PCYN:1,495-1,506 + AATGATTTAGAA – TTCTAAATCATT
ENSMUSG00000038157_PTRO Orthologue Pan troglodytes chr6:29,354,531-29,354,542 + AATCTTTGCTCA – TGAGCAAAGATT
ENSMUSG00000038157_RNOR Orthologue Rattus norvegicus chr4:81,900,657-81,900,668 + AATCTTTGCTCA – TGAGCAAAGATT
ENSMUSG00000038157_SSCR Orthologue Sus scrofa ENSMUSG00000038157_SSCR:1,486-1,497 + AATGATTTAGAA – TTCTAAATCATT
ENSMUSG00000038157_TBEL Orthologue Tupaia belangeri ENSMUSG00000038157_TBEL:1,075-1,086 + AATGATTTAGAA – TTCTAAATCATT
ENSMUSG00000038157_TNIG Orthologue Tetraodon nigroviridis chr8:6,579,940-6,579,951 – AATCTTTTCTCA + TGAGAAAAGATT
ENSMUSG00000038157_XTRO Orthologue Xenopus tropicalis scaffold_29:2,579,440-2,579,451 + TATGATTTAGAA – TTCTAAATCATA

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