FILTERS:
pvalue:0.1
Motif craMmus305535
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus305535
Discovery p-value 2.79E-03
Motif location chr2: 87,214,499-87,214,508 (+) (10 bp)
Search region location chr2: 87,213,574-87,215,449 (+) (1,876 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 13 species: Mus musculus, Canis familiaris, Choloepus hoffmanni, Dasypus novemcinctus, Danio rerio, Echinops telfairi, Fugu rubripes, Homo sapiens, Loxodonta africana, Monodelphis domestica, Oryctolagus cuniculus, Pan troglodytes, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 1 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (1 annot.): CUTL1(1.91E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence mATAATrmTA TAkyATTATk
Position frequency matrix
1 2 3 4 5 6 7 8 9 10
A 5 13 2 12 13 0 7 6 3 13
C 5 0 0 0 0 0 0 7 0 0
G 0 0 0 0 0 0 6 0 0 0
T 3 0 11 1 0 13 0 0 10 0
m A T A A T r m T A
1 2 3 4 5 6 7 8 9 10
A 0 10 0 0 13 0 1 11 0 3
C 0 0 0 6 0 0 0 0 0 0
G 0 0 7 0 0 0 0 0 0 5
T 13 3 6 7 0 13 12 2 13 5
T A k y A T T A T k

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000070852 Target Mus musculus chr2:87,214,499-87,214,508 + TATAATGCTA – TAGCATTATA
ENSMUSG00000070852_CFAM Orthologue Canis familiaris chr18:42,947,551-42,947,560 + CATAATGATA – TATCATTATG
ENSMUSG00000070852_CHOF Orthologue Choloepus hoffmanni ENSMUSG00000070852_CHOF:346-355 – AATAATAAAA + TTTTATTATT
ENSMUSG00000070852_DNOV Orthologue Dasypus novemcinctus scaffold_56550:6,601-6,610 – TATTATGATA + TATCATAATA
ENSMUSG00000070852_DRER Orthologue Danio rerio chr21:38,800,708-38,800,717 – TAAAATACTA + TAGTATTTTA
ENSMUSG00000070852_ETEL Orthologue Echinops telfairi scaffold_240389:11,356-11,365 + AATAATACTA – TAGTATTATT
ENSMUSG00000070852_FRUB Orthologue Fugu rubripes chrUn:265,455,754-265,455,763 – CATAATGAAA + TTTCATTATG
ENSMUSG00000070852_HSAP Orthologue Homo sapiens chr11:55,492,402-55,492,411 – CATAATACTA + TAGTATTATG
ENSMUSG00000070852_LAFR Orthologue Loxodonta africana scaffold_17988:23,776-23,785 + AATAATACTA – TAGTATTATT
ENSMUSG00000070852_MDOM Orthologue Monodelphis domestica scaffold_33:17,490,999-17,491,008 + CAAAATGATA – TATCATTTTG
ENSMUSG00000070852_OCUN Orthologue Oryctolagus cuniculus scaffold_110707:14,332-14,341 – AATAATAATA + TATTATTATT
ENSMUSG00000070852_PTRO Orthologue Pan troglodytes 9_random:27,135,548-27,135,557 – CATAATACTA + TAGTATTATG
ENSMUSG00000070852_XTRO Orthologue Xenopus tropicalis scaffold_10:4,823,471-4,823,480 – AATAATGCAA + TTGCATTATT

Questions or comments: cisred@bcgsc.ca