FILTERS:
pvalue:0.1
Motif craMmus305555
More information about this gene at Ensembl.org Go to UCSC
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+ has a discovery p-value < 0.1
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus305555
Discovery p-value 2.79E-03
Motif location chr2: 87,152,194-87,152,199 (+) (6 bp)
Search region location chr2: 87,151,007-87,152,706 (+) (1,700 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 16 species: Mus musculus, Bos taurus, Canis familiaris, Dasypus novemcinctus, Erinaceus europaeus, Echinops telfairi, Fugu rubripes, Gallus gallus, Homo sapiens, Loxodonta africana, Macaca mulatta, Oryctolagus cuniculus, Pan troglodytes, Spermophilus tridecemlineatus, Tupaia belangeri, Tetraodon nigroviridis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 2 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (2 annot.): VDR(1.20E-04) ,    POU2F1(1.34E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence AAATGA TCATTT
Position frequency matrix
1 2 3 4 5 6
A 16 16 16 0 0 16
C 0 0 0 0 0 0
G 0 0 0 0 16 0
T 0 0 0 16 0 0
A A A T G A
1 2 3 4 5 6
A 0 0 16 0 0 0
C 0 16 0 0 0 0
G 0 0 0 0 0 0
T 16 0 0 16 16 16
T C A T T T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000070854 Target Mus musculus chr2:87,152,194-87,152,199 + AAATGA – TCATTT
ENSMUSG00000070854_BTAU Orthologue Bos taurus chr2:606,345-606,350 + AAATGA – TCATTT
ENSMUSG00000070854_CFAM Orthologue Canis familiaris chr18:42,955,975-42,955,980 + AAATGA – TCATTT
ENSMUSG00000070854_DNOV Orthologue Dasypus novemcinctus scaffold_56908:504-509 + AAATGA – TCATTT
ENSMUSG00000070854_EEUR Orthologue Erinaceus europaeus ENSMUSG00000070854_EEUR:128-133 + AAATGA – TCATTT
ENSMUSG00000070854_ETEL Orthologue Echinops telfairi scaffold_240389:2,694-2,699 + AAATGA – TCATTT
ENSMUSG00000070854_FRUB Orthologue Fugu rubripes chrUn:304,390,655-304,390,660 – AAATGA + TCATTT
ENSMUSG00000070854_GGAL Orthologue Gallus gallus chr10:1,824,678-1,824,683 – AAATGA + TCATTT
ENSMUSG00000070854_HSAP Orthologue Homo sapiens chr11:55,492,669-55,492,674 – AAATGA + TCATTT
ENSMUSG00000070854_LAFR Orthologue Loxodonta africana scaffold_8581:46,990-46,995 – AAATGA + TCATTT
ENSMUSG00000070854_MMUL Orthologue Macaca mulatta SCAFFOLD126104:4,434-4,439 + AAATGA – TCATTT
ENSMUSG00000070854_OCUN Orthologue Oryctolagus cuniculus scaffold_98029:34-39 – AAATGA + TCATTT
ENSMUSG00000070854_PTRO Orthologue Pan troglodytes 9_random:27,135,815-27,135,820 – AAATGA + TCATTT
ENSMUSG00000070854_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000070854_STRI:530-535 + AAATGA – TCATTT
ENSMUSG00000070854_TBEL Orthologue Tupaia belangeri ENSMUSG00000070854_TBEL:79-84 + AAATGA – TCATTT
ENSMUSG00000070854_TNIG Orthologue Tetraodon nigroviridis Un_random:119,186,256-119,186,261 + AAATGA – TCATTT

Questions or comments: cisred@bcgsc.ca