FILTERS:
pvalue:0.1
Motif craMmus30603
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus30603
Discovery p-value 4.04E-04
Motif location chr14: 24,433,274-24,433,279 (+) (6 bp)
Search region location chr14: 24,428,600-24,433,328 (+) (4,729 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 27 species: Mus musculus, Bos taurus, Canis familiaris, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Equus caballus, Erinaceus europaeus, Echinops telfairi, Felis catus, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Myotis lucifugus, Macaca mulatta, Oryctolagus cuniculus, Otolemur garnettii, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sorex araneus, Sus scrofa, Spermophilus tridecemlineatus, Tupaia belangeri, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 8 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (7 annot.): Chx10(1.39E-05) ,    Brachyury(3.11E-04) ,    HNF-1alpha(3.86E-04) ,    Lhx3a(4.76E-04) ,    S8(5.40E-04) ...
ORegAnno: (1 annot.): FoxA1(4.25E-04)
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TAATTA TAATTA
Position frequency matrix
1 2 3 4 5 6
A 0 27 27 0 0 27
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 27 0 0 27 27 0
T A A T T A
1 2 3 4 5 6
A 0 27 27 0 0 27
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 27 0 0 27 27 0
T A A T T A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000040726 Target Mus musculus chr14:24,433,274-24,433,279 + TAATTA – TAATTA
ENSMUSG00000040726_BTAU Orthologue Bos taurus chr22:33,121,359-33,121,364 + TAATTA – TAATTA
ENSMUSG00000040726_CFAM Orthologue Canis familiaris chr20:36,192,701-36,192,706 – TAATTA + TAATTA
ENSMUSG00000040726_CJAC Orthologue Callithrix jacchus ENSMUSG00000040726_CJAC:72-77 – TAATTA + TAATTA
ENSMUSG00000040726_CPOR Orthologue Cavia porcellus ENSMUSG00000040726_CPOR:567-572 – TAATTA + TAATTA
ENSMUSG00000040726_DNOV Orthologue Dasypus novemcinctus scaffold_8037:12,917-12,922 + TAATTA – TAATTA
ENSMUSG00000040726_ECAB Orthologue Equus caballus ENSMUSG00000040726_ECAB:608-613 – TAATTA + TAATTA
ENSMUSG00000040726_EEUR Orthologue Erinaceus europaeus ENSMUSG00000040726_EEUR:644-649 – TAATTA + TAATTA
ENSMUSG00000040726_ETEL Orthologue Echinops telfairi scaffold_38033:5,040-5,045 – TAATTA + TAATTA
ENSMUSG00000040726_FCAT Orthologue Felis catus ENSMUSG00000040726_FCAT:356-361 – TAATTA + TAATTA
ENSMUSG00000040726_GGAL Orthologue Gallus gallus chr12:8,662,399-8,662,404 + TAATTA – TAATTA
ENSMUSG00000040726_HSAP Orthologue Homo sapiens chr3:57,209,207-57,209,212 + TAATTA – TAATTA
ENSMUSG00000040726_LAFR Orthologue Loxodonta africana scaffold_9513:684-689 + TAATTA – TAATTA
ENSMUSG00000040726_MDOM Orthologue Monodelphis domestica scaffold_76:291,635-291,640 – TAATTA + TAATTA
ENSMUSG00000040726_MLUC Orthologue Myotis lucifugus ENSMUSG00000040726_MLUC:528-533 – TAATTA + TAATTA
ENSMUSG00000040726_MMUL Orthologue Macaca mulatta SCAFFOLD21016:34,184-34,189 – TAATTA + TAATTA
ENSMUSG00000040726_OCUN Orthologue Oryctolagus cuniculus scaffold_152763:7,955-7,960 + TAATTA – TAATTA
ENSMUSG00000040726_OGAR Orthologue Otolemur garnettii ENSMUSG00000040726_OGAR:493-498 – TAATTA + TAATTA
ENSMUSG00000040726_PCAP Orthologue Procavia capensis ENSMUSG00000040726_PCAP:72-77 – TAATTA + TAATTA
ENSMUSG00000040726_PPYG Orthologue Pongo pygmaeus ENSMUSG00000040726_PPYG:124-129 – TAATTA + TAATTA
ENSMUSG00000040726_PTRO Orthologue Pan troglodytes chr2:58,872,491-58,872,496 + TAATTA – TAATTA
ENSMUSG00000040726_RNOR Orthologue Rattus norvegicus chr16:2,255,273-2,255,278 – TAATTA + TAATTA
ENSMUSG00000040726_SARA Orthologue Sorex araneus ENSMUSG00000040726_SARA:607-612 – TAATTA + TAATTA
ENSMUSG00000040726_SSCR Orthologue Sus scrofa ENSMUSG00000040726_SSCR:522-527 – TAATTA + TAATTA
ENSMUSG00000040726_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000040726_STRI:427-432 – TAATTA + TAATTA
ENSMUSG00000040726_TBEL Orthologue Tupaia belangeri ENSMUSG00000040726_TBEL:3,776-3,781 – TAATTA + TAATTA
ENSMUSG00000040726_XTRO Orthologue Xenopus tropicalis scaffold_80:2,529,186-2,529,191 + TAATTA – TAATTA

Questions or comments: cisred@bcgsc.ca