FILTERS:
pvalue:0.1
Motif craMmus306998
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus306998
Discovery p-value 2.79E-03
Motif location chr12: 39,319,267-39,319,285 (-) (19 bp)
Search region location chr12: 39,318,395-39,320,181 (-) (1,787 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 21 species: Mus musculus, Bos taurus, Canis familiaris, Callithrix jacchus, Dasypus novemcinctus, Echinops telfairi, Felis catus, Homo sapiens, Monodelphis domestica, Macropus eugenii, Macaca mulatta, Nomascus leucogenys, Otolemur garnettii, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sus scrofa, Spermophilus tridecemlineatus, Tupaia belangeri, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 1 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (1 annot.): POU2F1(2.86E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence GTTGTCACACTGACATGGT ACCATGTCAGTGTGACAAC
Position frequency matrix
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
A 0 0 1 0 0 0 21 0 21 2 0 0 20 0 21 0 0 0 1
C 0 0 0 0 0 19 0 21 0 19 0 0 0 21 0 0 0 0 2
G 21 2 0 19 0 0 0 0 0 0 0 21 1 0 0 0 19 19 0
T 0 19 20 2 21 2 0 0 0 0 21 0 0 0 0 21 2 2 18
G T T G T C A C A C T G A C A T G G T
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
A 18 2 2 21 0 0 0 0 21 0 0 0 0 2 21 2 20 19 0
C 0 19 19 0 0 0 1 21 0 0 0 0 0 0 0 19 0 2 21
G 2 0 0 0 0 21 0 0 0 19 0 21 0 19 0 0 0 0 0
T 1 0 0 0 21 0 20 0 0 2 21 0 21 0 0 0 1 0 0
A C C A T G T C A G T G T G A C A A C

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000036295 Target Mus musculus chr12:39,319,267-39,319,285 + GGTTTTACAATGACATTTC – GAAATGTCATTGTAAAACC
ENSMUSG00000036295_BTAU Orthologue Bos taurus chr4:29,799,698-29,799,716 + GTTGTCACACTGACATGGT – ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_CFAM Orthologue Canis familiaris chr14:53,853,936-53,853,954 – GTTGTCACACTGACATGGT + ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_CJAC Orthologue Callithrix jacchus ENSMUSG00000036295_CJAC:263-281 – GTAGTCACACTGACATGGA + TCCATGTCAGTGTGACTAC
ENSMUSG00000036295_DNOV Orthologue Dasypus novemcinctus scaffold_62025:35,721-35,739 + GTTGTCACACTGACATGGT – ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_ETEL Orthologue Echinops telfairi scaffold_324708:115,647-115,665 – GTTGTCACACTGACATGGT + ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_FCAT Orthologue Felis catus ENSMUSG00000036295_FCAT:226-244 – GTTGTCACACTGACATGGT + ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_HSAP Orthologue Homo sapiens chr7:110,325,129-110,325,147 – GTTGTCACACTGACATGGT + ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_MDOM Orthologue Monodelphis domestica scaffold_22:39,762,972-39,762,990 + GTTGTCACACTGACATGGT – ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_MEUG Orthologue Macropus eugenii ENSMUSG00000036295_MEUG:47-65 – GTTGTCACACTGACATGGT + ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_MMUL Orthologue Macaca mulatta SCAFFOLD55349:24,456-24,474 + GTTGTCACACTGACATGGT – ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_NLEU Orthologue Nomascus leucogenys ENSMUSG00000036295_NLEU:226-244 – GTTGTCACACTGACATGGT + ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_OGAR Orthologue Otolemur garnettii ENSMUSG00000036295_OGAR:269-287 – GTTGTCACACTGACATGGT + ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_PCAP Orthologue Procavia capensis ENSMUSG00000036295_PCAP:170-188 – GTTGTCACACTGACATGGT + ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_PPYG Orthologue Pongo pygmaeus ENSMUSG00000036295_PPYG:295-313 – GTTGTCACACTGACATGGT + ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_PTRO Orthologue Pan troglodytes chr6:112,277,260-112,277,278 – GTTGTCACACTGACATGGT + ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_RNOR Orthologue Rattus norvegicus chr6:60,780,808-60,780,826 + GGTTTTACAATGGCATTTC – GAAATGCCATTGTAAAACC
ENSMUSG00000036295_SSCR Orthologue Sus scrofa ENSMUSG00000036295_SSCR:223-241 – GTTGTCACACTGACATGGT + ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000036295_STRI:215-233 – GTTGTCACACTGACATGGT + ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_TBEL Orthologue Tupaia belangeri ENSMUSG00000036295_TBEL:263-281 – GTTGTCACACTGACATGGT + ACCATGTCAGTGTGACAAC
ENSMUSG00000036295_XTRO Orthologue Xenopus tropicalis scaffold_66:86,333-86,351 + GTTGTCACACTGACATGGT – ACCATGTCAGTGTGACAAC

Questions or comments: cisred@bcgsc.ca