FILTERS:
pvalue:0.1
Motif craMmus31170
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus31170
Discovery p-value 2.79E-03
Motif location chr17: 42,937,748-42,937,753 (-) (6 bp)
Search region location chr17: 42,937,736-42,939,702 (-) (1,967 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 27 species: Mus musculus, Canis familiaris, Choloepus hoffmanni, Callithrix jacchus, Cavia porcellus, Equus caballus, Erinaceus europaeus, Felis catus, Fugu rubripes, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macropus eugenii, Myotis lucifugus, Macaca mulatta, Ornithorhynchus anatinus, Otolemur garnettii, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Sorex araneus, Sus scrofa, Spermophilus tridecemlineatus, Tupaia belangeri, Tetraodon nigroviridis, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 3 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (3 annot.): FOXD3(1.98E-04) ,    HNF-3(2.43E-04) ,    HP1_site_factor(8.43E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATATTT AAATAT
Position frequency matrix
1 2 3 4 5 6
A 27 0 27 0 0 0
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 0 27 0 27 27 27
A T A T T T
1 2 3 4 5 6
A 27 27 27 0 27 0
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 0 0 0 27 0 27
A A A T A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000039153 Target Mus musculus chr17:42,937,748-42,937,753 + ATATTT – AAATAT
ENSMUSG00000039153_CFAM Orthologue Canis familiaris chr12:16,630,560-16,630,565 – ATATTT + AAATAT
ENSMUSG00000039153_CHOF Orthologue Choloepus hoffmanni ENSMUSG00000039153_CHOF:233-238 – ATATTT + AAATAT
ENSMUSG00000039153_CJAC Orthologue Callithrix jacchus ENSMUSG00000039153_CJAC:1,997-2,002 – ATATTT + AAATAT
ENSMUSG00000039153_CPOR Orthologue Cavia porcellus ENSMUSG00000039153_CPOR:1,661-1,666 – ATATTT + AAATAT
ENSMUSG00000039153_ECAB Orthologue Equus caballus ENSMUSG00000039153_ECAB:2,018-2,023 – ATATTT + AAATAT
ENSMUSG00000039153_EEUR Orthologue Erinaceus europaeus ENSMUSG00000039153_EEUR:159-164 – ATATTT + AAATAT
ENSMUSG00000039153_FCAT Orthologue Felis catus ENSMUSG00000039153_FCAT:400-405 – ATATTT + AAATAT
ENSMUSG00000039153_FRUB Orthologue Fugu rubripes chrUn:88,008,979-88,008,984 + ATATTT – AAATAT
ENSMUSG00000039153_GGAL Orthologue Gallus gallus chr3:107,176,400-107,176,405 – ATATTT + AAATAT
ENSMUSG00000039153_HSAP Orthologue Homo sapiens chr6:45,403,532-45,403,537 – ATATTT + AAATAT
ENSMUSG00000039153_LAFR Orthologue Loxodonta africana scaffold_14862:78,038-78,043 – ATATTT + AAATAT
ENSMUSG00000039153_MDOM Orthologue Monodelphis domestica scaffold_0:195,234,728-195,234,733 + ATATTT – AAATAT
ENSMUSG00000039153_MEUG Orthologue Macropus eugenii ENSMUSG00000039153_MEUG:1,974-1,979 – ATATTT + AAATAT
ENSMUSG00000039153_MLUC Orthologue Myotis lucifugus ENSMUSG00000039153_MLUC:1,978-1,983 – ATATTT + AAATAT
ENSMUSG00000039153_MMUL Orthologue Macaca mulatta SCAFFOLD5174:74,399-74,404 + ATATTT – AAATAT
ENSMUSG00000039153_OANA Orthologue Ornithorhynchus anatinus ENSMUSG00000039153_OANA:1,874-1,879 – ATATTT + AAATAT
ENSMUSG00000039153_OGAR Orthologue Otolemur garnettii ENSMUSG00000039153_OGAR:359-364 – ATATTT + AAATAT
ENSMUSG00000039153_PCAP Orthologue Procavia capensis ENSMUSG00000039153_PCAP:1,118-1,123 – ATATTT + AAATAT
ENSMUSG00000039153_PPYG Orthologue Pongo pygmaeus ENSMUSG00000039153_PPYG:1,991-1,996 – ATATTT + AAATAT
ENSMUSG00000039153_PTRO Orthologue Pan troglodytes chr5:46,007,245-46,007,250 – ATATTT + AAATAT
ENSMUSG00000039153_SARA Orthologue Sorex araneus ENSMUSG00000039153_SARA:1,981-1,986 – ATATTT + AAATAT
ENSMUSG00000039153_SSCR Orthologue Sus scrofa ENSMUSG00000039153_SSCR:1,979-1,984 – ATATTT + AAATAT
ENSMUSG00000039153_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000039153_STRI:286-291 – ATATTT + AAATAT
ENSMUSG00000039153_TBEL Orthologue Tupaia belangeri ENSMUSG00000039153_TBEL:1,125-1,130 – ATATTT + AAATAT
ENSMUSG00000039153_TNIG Orthologue Tetraodon nigroviridis chr14:7,841,879-7,841,884 – ATATTT + AAATAT
ENSMUSG00000039153_XTRO Orthologue Xenopus tropicalis scaffold_428:820,618-820,623 + ATATTT – AAATAT

Questions or comments: cisred@bcgsc.ca