FILTERS:
pvalue:0.1
Motif craMmus341538
More information about this gene at Ensembl.org Go to UCSC
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Currently, this page only shows information about a motif if it:
+ has a discovery p-value < 0.1
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus341538
Discovery p-value 2.79E-03
Motif location chr19: 13,468,527-13,468,532 (+) (6 bp)
Search region location chr19: 13,467,330-13,469,236 (+) (1,907 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 12 species: Mus musculus, Canis familiaris, Dasypus novemcinctus, Danio rerio, Equus caballus, Fugu rubripes, Homo sapiens, Monodelphis domestica, Macaca mulatta, Oryctolagus cuniculus, Pan troglodytes, Rattus norvegicus
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 6 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (6 annot.): aMEF-2(3.61E-05) ,    MEF-2A(5.81E-05) ,    aMEF-2(5.99E-05) ,    RSRFC4(1.64E-04) ,    RSRFC4(1.98E-04) ...
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATATTT AAATAT
Position frequency matrix
1 2 3 4 5 6
A 12 0 12 0 0 0
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 0 12 0 12 12 12
A T A T T T
1 2 3 4 5 6
A 12 12 12 0 12 0
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 0 0 0 12 0 12
A A A T A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000047207 Target Mus musculus chr19:13,468,527-13,468,532 + ATATTT – AAATAT
ENSMUSG00000047207_CFAM Orthologue Canis familiaris chr18:41,190,238-41,190,243 + ATATTT – AAATAT
ENSMUSG00000047207_DNOV Orthologue Dasypus novemcinctus scaffold_220756:11-16 + ATATTT – AAATAT
ENSMUSG00000047207_DRER Orthologue Danio rerio chr21:38,801,251-38,801,256 + ATATTT – AAATAT
ENSMUSG00000047207_ECAB Orthologue Equus caballus ENSMUSG00000047207_ECAB:418-423 + ATATTT – AAATAT
ENSMUSG00000047207_FRUB Orthologue Fugu rubripes chrUn:198,144,477-198,144,482 + ATATTT – AAATAT
ENSMUSG00000047207_HSAP Orthologue Homo sapiens chr11:57,755,006-57,755,011 – ATATTT + AAATAT
ENSMUSG00000047207_MDOM Orthologue Monodelphis domestica scaffold_33:21,311,206-21,311,211 – ATATTT + AAATAT
ENSMUSG00000047207_MMUL Orthologue Macaca mulatta SCAFFOLD5007:56,299-56,304 + ATATTT – AAATAT
ENSMUSG00000047207_OCUN Orthologue Oryctolagus cuniculus scaffold_121913:5,930-5,935 + ATATTT – AAATAT
ENSMUSG00000047207_PTRO Orthologue Pan troglodytes chr9:58,670,989-58,670,994 – ATATTT + AAATAT
ENSMUSG00000047207_RNOR Orthologue Rattus norvegicus chr1:217,013,960-217,013,965 – ATATTT + AAATAT

Questions or comments: cisred@bcgsc.ca