cisRED: cis-regulatory element database

cisRED > Mouse 3.1 > gene. ENSMUSG00000046575 > craMmus34491

Motif craMmus34491

More information about this gene at Ensembl.org

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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation

Motif overview
Atomic motif id	craMmus34491
Discovery p-value	2.79E-03
Motif location	chr11: 49,385,940-49,385,945 (+) (6 bp)
Search region location	chr11: 49,385,735-49,387,434 (+) (1,700 bp)
Assembly	Mouse, Ensembl v38 (NCBI m35)
Found in	13 species: Mus musculus, Bos taurus, Dasypus novemcinctus, Echinops telfairi, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macaca mulatta, Pan troglodytes, Rattus norvegicus, Tetraodon nigroviridis, Xenopus tropicalis
Found with	MotifSampler
'De Novo' motif group ID	This motif was not submitted for clustering.
Similar to (annotation p-value)	There are 0 annotation(s) with p-values below 0.001. JASPAR: (0 annot.): none TRANSFAC: (0 annot.): none ORegAnno: (0 annot.): none
Modules (Co-occurring motif patterns)	No annotation-based modules contain this motif. No 'de novo' modules exist in this database.

Sequence Conservation

Sequence logo

(+)motif

(-)motif

Consensus sequence

AACATA

TATGTT

Position frequency matrix

	1	2	3	4	5	6
A	13	11	0	13	0	13
C	0	0	13	0	0	0
G	0	0	0	0	0	0
T	0	2	0	0	13	0
	A	A	C	A	T	A

Transfac

Jaspar

CSV

	1	2	3	4	5	6
A	0	13	0	0	2	0
C	0	0	0	0	0	0
G	0	0	0	13	0	0
T	13	0	13	0	11	13
	T	A	T	G	T	T

Transfac

Jaspar

CSV

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Ensembl gene ID	Type	Species	Position	Std	(+)Sequence	Std	(-)Sequence
Site Sequence Stack
ENSMUSG00000046575	Target	Mus musculus	chr11:49,385,940-49,385,945	+	AACATA	–	TATGTT
ENSMUSG00000046575_BTAU	Orthologue	Bos taurus	chr3:62,404,777-62,404,782	–	AACATA	+	TATGTT
ENSMUSG00000046575_DNOV	Orthologue	Dasypus novemcinctus	scaffold_11615:11,081-11,086	+	AACATA	–	TATGTT
ENSMUSG00000046575_ETEL	Orthologue	Echinops telfairi	scaffold_211188:5,584-5,589	–	AACATA	+	TATGTT
ENSMUSG00000046575_GGAL	Orthologue	Gallus gallus	chr5:58,156-58,161	+	ATCATA	–	TATGAT
ENSMUSG00000046575_HSAP	Orthologue	Homo sapiens	chr5:180,101,579-180,101,584	–	AACATA	+	TATGTT
ENSMUSG00000046575_LAFR	Orthologue	Loxodonta africana	scaffold_31389:18,923-18,928	–	AACATA	+	TATGTT
ENSMUSG00000046575_MDOM	Orthologue	Monodelphis domestica	scaffold_42:19,864,734-19,864,739	+	AACATA	–	TATGTT
ENSMUSG00000046575_MMUL	Orthologue	Macaca mulatta	SCAFFOLD53:51,317-51,322	–	AACATA	+	TATGTT
ENSMUSG00000046575_PTRO	Orthologue	Pan troglodytes	chr4:187,639,551-187,639,556	–	AACATA	+	TATGTT
ENSMUSG00000046575_RNOR	Orthologue	Rattus norvegicus	chr10:34,819,562-34,819,567	+	AACATA	–	TATGTT
ENSMUSG00000046575_TNIG	Orthologue	Tetraodon nigroviridis	Un_random:124,233,946-124,233,951	–	ATCATA	+	TATGAT
ENSMUSG00000046575_XTRO	Orthologue	Xenopus tropicalis	scaffold_7:2,944,285-2,944,290	–	AACATA	+	TATGTT

Export Site Sequences Stack