FILTERS:
pvalue:0.1
Motif craMmus349488
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus349488
Discovery p-value 7.14E-02
Motif location chr6: 112,650,628-112,650,643 (-) (16 bp)
Search region location chr6: 112,650,552-112,652,278 (-) (1,727 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 23 species: Mus musculus, Bos taurus, Canis familiaris, Choloepus hoffmanni, Callithrix jacchus, Cavia porcellus, Danio rerio, Equus caballus, Felis catus, Fugu rubripes, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Myotis lucifugus, Macaca mulatta, Oryctolagus cuniculus, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Spermophilus tridecemlineatus, Tetraodon nigroviridis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 1 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (1 annot.): CAR(8.88E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 No annotation-based modules contain this motif.
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence CGCGCCAGGGCCTCGT ACGAGGCCCTGGCGCG
Position frequency matrix
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
A 0 1 2 5 0 0 21 1 0 0 1 0 2 0 0 2
C 16 6 16 0 22 17 1 0 0 5 19 23 0 16 1 4
G 5 15 4 16 0 5 0 21 23 18 0 0 0 7 22 0
T 2 1 1 2 1 1 1 1 0 0 3 0 21 0 0 17
C G C G C C A G G G C C T C G T
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
A 17 0 0 21 0 3 0 0 1 1 1 1 2 1 1 2
C 0 22 7 0 0 0 18 23 21 0 5 0 16 4 15 5
G 4 1 16 0 23 19 5 0 0 1 17 22 0 16 6 16
T 2 0 0 2 0 1 0 0 1 21 0 0 5 2 1 0
A C G A G G C C C T G G C G C G

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000049112 Target Mus musculus chr6:112,650,628-112,650,643 + CGCGCCAGGGCCTCGT – ACGAGGCCCTGGCGCG
ENSMUSG00000049112_BTAU Orthologue Bos taurus chr22:14,347,442-14,347,457 + CGCGCCAGGGCCTCGT – ACGAGGCCCTGGCGCG
ENSMUSG00000049112_CFAM Orthologue Canis familiaris chr20:12,362,162-12,362,177 – CGCGCCAGGGCCTCGT + ACGAGGCCCTGGCGCG
ENSMUSG00000049112_CHOF Orthologue Choloepus hoffmanni ENSMUSG00000049112_CHOF:132-147 + GCAATGAGGCCCTGGC – GCCAGGGCCTCATTGC
ENSMUSG00000049112_CJAC Orthologue Callithrix jacchus ENSMUSG00000049112_CJAC:1,402-1,417 + GCGACGAGGCTCTGGC – GCCAGAGCCTCGTCGC
ENSMUSG00000049112_CPOR Orthologue Cavia porcellus ENSMUSG00000049112_CPOR:324-339 – CGCGCCAGGGCCTCGT + ACGAGGCCCTGGCGCG
ENSMUSG00000049112_DRER Orthologue Danio rerio chr6:23,884,460-23,884,475 – CACACCAGGGTCAGGA + TCCTGACCCTGGTGTG
ENSMUSG00000049112_ECAB Orthologue Equus caballus ENSMUSG00000049112_ECAB:1,394-1,409 – GGCGCCAGGGCCTCGT + ACGAGGCCCTGGCGCC
ENSMUSG00000049112_FCAT Orthologue Felis catus ENSMUSG00000049112_FCAT:340-355 – CGCGCCAGGGCCTCGT + ACGAGGCCCTGGCGCG
ENSMUSG00000049112_FRUB Orthologue Fugu rubripes chrUn:250,922,017-250,922,032 + GCCACGAAGGTCAGGC – GCCTGACCTTCGTGGC
ENSMUSG00000049112_GGAL Orthologue Gallus gallus chr26:964,602-964,617 + TCGTCCCGGCCCTGCA – TGCAGGGCCGGGACGA
ENSMUSG00000049112_HSAP Orthologue Homo sapiens chr3:8,784,755-8,784,770 + CGCGCCAGGGCCTCGT – ACGAGGCCCTGGCGCG
ENSMUSG00000049112_LAFR Orthologue Loxodonta africana scaffold_44564:809-824 – CGCGCCAGGGCCTCGT + ACGAGGCCCTGGCGCG
ENSMUSG00000049112_MDOM Orthologue Monodelphis domestica scaffold_5:35,548,533-35,548,548 + TTGGCCATGGCCTCGT – ACGAGGCCATGGCCAA
ENSMUSG00000049112_MLUC Orthologue Myotis lucifugus ENSMUSG00000049112_MLUC:271-286 – CGCGCCAGGGCCTCGT + ACGAGGCCCTGGCGCG
ENSMUSG00000049112_MMUL Orthologue Macaca mulatta SCAFFOLD75208:118,447-118,462 + CGCGCCAGGGCCTCGT – ACGAGGCCCTGGCGCG
ENSMUSG00000049112_OCUN Orthologue Oryctolagus cuniculus scaffold_183809:1,247-1,262 + CGCGCTAGGGCCTCGT – ACGAGGCCCTAGCGCG
ENSMUSG00000049112_PCAP Orthologue Procavia capensis ENSMUSG00000049112_PCAP:324-339 – CGTGCGAGGGCCTCGT + ACGAGGCCCTCGCACG
ENSMUSG00000049112_PPYG Orthologue Pongo pygmaeus ENSMUSG00000049112_PPYG:389-404 – CGCGCCAGGGCCTCGT + ACGAGGCCCTGGCGCG
ENSMUSG00000049112_PTRO Orthologue Pan troglodytes chr2:9,119,973-9,119,988 + CGCGCCAGGGCCTCGT – ACGAGGCCCTGGCGCG
ENSMUSG00000049112_RNOR Orthologue Rattus norvegicus chr4:148,571,520-148,571,535 + CGCGCCAGGGCCTCGT – ACGAGGCCCTGGCGCG
ENSMUSG00000049112_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000049112_STRI:1,518-1,533 + GCAACGAGGCACTGGC – GCCAGTGCCTCGTTGC
ENSMUSG00000049112_TNIG Orthologue Tetraodon nigroviridis Un_random:89,679,703-89,679,718 – CCGTCCTGGCCCTGGT + ACCAGGGCCAGGACGG

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