FILTERS:
pvalue:0.1
Motif craMmus3530
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus3530
Discovery p-value 2.79E-03
Motif location chr6: 52,198,323-52,198,330 (-) (8 bp)
Search region location chr6: 52,198,109-52,199,830 (-) (1,722 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 26 species: Mus musculus, Bos taurus, Canis familiaris, Choloepus hoffmanni, Dasypus novemcinctus, Equus caballus, Erinaceus europaeus, Echinops telfairi, Felis catus, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macropus eugenii, Myotis lucifugus, Macaca mulatta, Microcebus murinus, Ornithorhynchus anatinus, Oryctolagus cuniculus, Otolemur garnettii, Papio anubis, Procavia capensis, Pan troglodytes, Rattus norvegicus, Spermophilus tridecemlineatus, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 4 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (4 annot.): FOXP3(2.29E-04) ,    FOXO1(7.80E-04) ,    POU1F1(8.36E-04) ,    POU3F2(8.83E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence GmmTACGA TCGTAkkC
Position frequency matrix
1 2 3 4 5 6 7 8
A 0 15 17 0 26 0 0 26
C 0 11 9 0 0 26 0 0
G 26 0 0 0 0 0 26 0
T 0 0 0 26 0 0 0 0
G m n T A C G A
1 2 3 4 5 6 7 8
A 0 0 0 0 26 0 0 0
C 0 26 0 0 0 0 0 26
G 0 0 26 0 0 9 11 0
T 26 0 0 26 0 17 15 0
T C G T A n k C

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000000938 Target Mus musculus chr6:52,198,323-52,198,330 + GAATACGA – TCGTATTC
ENSMUSG00000000938_BTAU Orthologue Bos taurus chr4:40,168,380-40,168,387 – GAATACGA + TCGTATTC
ENSMUSG00000000938_CFAM Orthologue Canis familiaris chr14:43,304,419-43,304,426 + GAATACGA – TCGTATTC
ENSMUSG00000000938_CHOF Orthologue Choloepus hoffmanni ENSMUSG00000000938_CHOF:179-186 + GCCTACGA – TCGTAGGC
ENSMUSG00000000938_DNOV Orthologue Dasypus novemcinctus scaffold_49325:2,430-2,437 + GAATACGA – TCGTATTC
ENSMUSG00000000938_ECAB Orthologue Equus caballus ENSMUSG00000000938_ECAB:320-327 + GCCTACGA – TCGTAGGC
ENSMUSG00000000938_EEUR Orthologue Erinaceus europaeus ENSMUSG00000000938_EEUR:282-289 + GCCTACGA – TCGTAGGC
ENSMUSG00000000938_ETEL Orthologue Echinops telfairi scaffold_290176:39,387-39,394 – GAATACGA + TCGTATTC
ENSMUSG00000000938_FCAT Orthologue Felis catus ENSMUSG00000000938_FCAT:269-276 – GAATACGA + TCGTATTC
ENSMUSG00000000938_GGAL Orthologue Gallus gallus chr2:31,829,316-31,829,323 – GCATACGA + TCGTATGC
ENSMUSG00000000938_HSAP Orthologue Homo sapiens chr7:26,987,185-26,987,192 + GAATACGA – TCGTATTC
ENSMUSG00000000938_LAFR Orthologue Loxodonta africana scaffold_4768:80,021-80,028 + GAATACGA – TCGTATTC
ENSMUSG00000000938_MDOM Orthologue Monodelphis domestica scaffold_57:901,538-901,545 + GCCTACGA – TCGTAGGC
ENSMUSG00000000938_MEUG Orthologue Macropus eugenii ENSMUSG00000000938_MEUG:146-153 + GCCTACGA – TCGTAGGC
ENSMUSG00000000938_MLUC Orthologue Myotis lucifugus ENSMUSG00000000938_MLUC:210-217 + GCCTACGA – TCGTAGGC
ENSMUSG00000000938_MMUL Orthologue Macaca mulatta SCAFFOLD45104:46,218-46,225 + GAATACGA – TCGTATTC
ENSMUSG00000000938_MMUR Orthologue Microcebus murinus ENSMUSG00000000938_MMUR:396-403 – GAATACGA + TCGTATTC
ENSMUSG00000000938_OANA Orthologue Ornithorhynchus anatinus ENSMUSG00000000938_OANA:127-134 + GCCTACGA – TCGTAGGC
ENSMUSG00000000938_OCUN Orthologue Oryctolagus cuniculus scaffold_200437:135,186-135,193 – GAATACGA + TCGTATTC
ENSMUSG00000000938_OGAR Orthologue Otolemur garnettii ENSMUSG00000000938_OGAR:339-346 – GAATACGA + TCGTATTC
ENSMUSG00000000938_PANU Orthologue Papio anubis ENSMUSG00000000938_PANU:624-631 – GAATACGA + TCGTATTC
ENSMUSG00000000938_PCAP Orthologue Procavia capensis ENSMUSG00000000938_PCAP:183-190 + GCCTACGA – TCGTAGGC
ENSMUSG00000000938_PTRO Orthologue Pan troglodytes chr6:28,117,252-28,117,259 + GAATACGA – TCGTATTC
ENSMUSG00000000938_RNOR Orthologue Rattus norvegicus chr4:80,813,863-80,813,870 + GAATACGA – TCGTATTC
ENSMUSG00000000938_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000000938_STRI:1,114-1,121 + GCCTACGA – TCGTAGGC
ENSMUSG00000000938_XTRO Orthologue Xenopus tropicalis scaffold_29:1,951,652-1,951,659 – GCATACGA + TCGTATGC

Questions or comments: cisred@bcgsc.ca