FILTERS:
pvalue:0.1
Motif craMmus358233
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus358233
Discovery p-value 9.88E-04
Motif location chr10: 14,994,451-14,994,456 (+) (6 bp)
Search region location chr10: 14,993,208-14,995,150 (+) (1,943 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 23 species: Mus musculus, Canis familiaris, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Equus caballus, Erinaceus europaeus, Echinops telfairi, Felis catus, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Myotis lucifugus, Macaca mulatta, Ornithorhynchus anatinus, Oryctolagus cuniculus, Procavia capensis, Pan troglodytes, Sorex araneus, Sus scrofa, Spermophilus tridecemlineatus, Tupaia belangeri
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 11 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (8 annot.): HNF-6(8.88E-05) ,    S8(2.10E-04) ,    POU3F1(2.18E-04) ,    Pbx1a(7.30E-04) ,    Sox9(7.58E-04) ...
ORegAnno: (3 annot.): FoxA1(2.76E-04) ,    FoxA1(4.08E-04) ,    FoxA1(8.55E-04)
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATTkAT ATmAAT
Position frequency matrix
1 2 3 4 5 6
A 23 0 0 0 23 0
C 0 0 0 0 0 0
G 0 0 0 15 0 0
T 0 23 23 8 0 23
A T T n A T
1 2 3 4 5 6
A 23 0 8 23 23 0
C 0 0 15 0 0 0
G 0 0 0 0 0 0
T 0 23 0 0 0 23
A T n A A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000052280 Target Mus musculus chr10:14,994,451-14,994,456 + ATTGAT – ATCAAT
ENSMUSG00000052280_CFAM Orthologue Canis familiaris chr1:36,420,578-36,420,583 + ATTGAT – ATCAAT
ENSMUSG00000052280_CJAC Orthologue Callithrix jacchus ENSMUSG00000052280_CJAC:755-760 – ATTTAT + ATAAAT
ENSMUSG00000052280_CPOR Orthologue Cavia porcellus ENSMUSG00000052280_CPOR:157-162 – ATTGAT + ATCAAT
ENSMUSG00000052280_DNOV Orthologue Dasypus novemcinctus scaffold_220359:324-329 – ATTGAT + ATCAAT
ENSMUSG00000052280_ECAB Orthologue Equus caballus ENSMUSG00000052280_ECAB:262-267 – ATTTAT + ATAAAT
ENSMUSG00000052280_EEUR Orthologue Erinaceus europaeus ENSMUSG00000052280_EEUR:579-584 – ATTTAT + ATAAAT
ENSMUSG00000052280_ETEL Orthologue Echinops telfairi scaffold_321086:88,704-88,709 – ATTGAT + ATCAAT
ENSMUSG00000052280_FCAT Orthologue Felis catus ENSMUSG00000052280_FCAT:552-557 – ATTGAT + ATCAAT
ENSMUSG00000052280_GGAL Orthologue Gallus gallus chr3:52,191,572-52,191,577 + ATTGAT – ATCAAT
ENSMUSG00000052280_HSAP Orthologue Homo sapiens chr6:141,926,377-141,926,382 + ATTGAT – ATCAAT
ENSMUSG00000052280_LAFR Orthologue Loxodonta africana scaffold_10752:7,698-7,703 – ATTGAT + ATCAAT
ENSMUSG00000052280_MDOM Orthologue Monodelphis domestica scaffold_0:67,074,258-67,074,263 – ATTGAT + ATCAAT
ENSMUSG00000052280_MLUC Orthologue Myotis lucifugus ENSMUSG00000052280_MLUC:123-128 + ATTGAT – ATCAAT
ENSMUSG00000052280_MMUL Orthologue Macaca mulatta SCAFFOLD120196:1,161-1,166 + ATTGAT – ATCAAT
ENSMUSG00000052280_OANA Orthologue Ornithorhynchus anatinus ENSMUSG00000052280_OANA:114-119 – ATTTAT + ATAAAT
ENSMUSG00000052280_OCUN Orthologue Oryctolagus cuniculus scaffold_143077:5,525-5,530 – ATTGAT + ATCAAT
ENSMUSG00000052280_PCAP Orthologue Procavia capensis ENSMUSG00000052280_PCAP:357-362 – ATTTAT + ATAAAT
ENSMUSG00000052280_PTRO Orthologue Pan troglodytes chr5:144,832,753-144,832,758 + ATTGAT – ATCAAT
ENSMUSG00000052280_SARA Orthologue Sorex araneus ENSMUSG00000052280_SARA:135-140 + ATTGAT – ATCAAT
ENSMUSG00000052280_SSCR Orthologue Sus scrofa ENSMUSG00000052280_SSCR:5-10 – ATTTAT + ATAAAT
ENSMUSG00000052280_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000052280_STRI:989-994 – ATTTAT + ATAAAT
ENSMUSG00000052280_TBEL Orthologue Tupaia belangeri ENSMUSG00000052280_TBEL:261-266 – ATTTAT + ATAAAT

Questions or comments: cisred@bcgsc.ca